Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 347491
Title Oscillating dynamics of bacterial populations and their predators in response to fresh organic matter added to soil: The simulation model 'BACWAVE-WEB'
Author(s) Zelenev, V.V.; Bruggen, A.H.C. van; Leffelaar, P.A.; Bloem, J.; Semenov, A.M.
Source Soil Biology and Biochemistry 38 (2006)7. - ISSN 0038-0717 - p. 1690 - 1711.
DOI https://doi.org/10.1016/j.soilbio.2005.11.024
Department(s) Biological Farming Systems
Plant Production Systems
Soil Science Centre
PE&RC
ALTERRA Wageningen UR
Publication type Refereed Article in a scientific journal
Publication year 2006
Keyword(s) belowground food webs - protozoa-induced mineralization - habitable pore-space - winter-wheat fields - wave-like dynamics - nitrogen mineralization - grassland soils - short-term - microbial biomass - n-mineralization
Abstract Recently, regular oscillations in bacterial populations and growth rates of bacterial feeding nematodes (BFN) were shown to occur after addition of fresh organic matter to soil. This paper presents a model developed to investigate potential mechanisms of those oscillations, and whether they were initiated by bacteria¿substrate interactions or by predatory regulation of bacteria. The model was also used to investigate mineral nitrogen release during short-term organic matter decomposition. Experimental data originated from several microcosm experiments with a sandy soil amended with clover¿grass mixture. Numbers of bacteria and BFN, and nitrate and ammonium content in soil were measured daily during about a month, whereas protozoa were counted occasionally. A substrate-based food web model was constructed with 3 plant residue and 5 soil organic matter compartments, 3 trophic groups of bacteria (copiotrophic, oligotrophic and hydrolytic), and two predatory groups (BFN and protozoa). Both carbon and nitrogen flows between these compartments were modelled. Fluctuations in microbial populations in soil after plant residue incorporation could be reproduced with and without participation of predators. The first two peaks in bacterial numbers were mainly related to bacteria¿substrate interactions, while predators (particularly protozoa) influenced bacterial dynamics during later stages of bacterial community development. Oligotrophic bacteria had a stabilizing effect on fluctuations of other trophic groups, and were the main source of nutrients for predators. A peak in soil ammonium occurred within 1 week after residue incorporation. Nitrate increased sigmoidally after a short lag phase. The final nitrate concentration was primarily determined by bacterial dynamics, and to a lesser extent by protozoa and nematodes. This model indicates the importance of substrate¿consumer relations for regulation of populations at different trophic levels and nutrient release from fresh organic matter added to soil.
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