Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 399678
Title Diversity and spatial scaling of the soil metagenome
Author(s) Monroy, F.; Bezemer, T.M.; Putten, W.H. van der
Event Soil Metagenomics 2010, 2010-12-08/2010-12-10
Department(s) Laboratory of Nematology
PE&RC
Publication type Poster (professional)
Publication year 2010
Abstract Poster session 3 – Scale and Biogeography P 19 Diversity and spatial scaling of the soil metagenome F. Monroy1,2, T.M. Bezemer2, W.H. van der Putten2,3 1Universidade de Vigo, Ecoloxía e Bioloxía Animal, Vigo, Spain 2Netherlands Institute of Ecology, Heteren, Netherlands 3Wageningen University, Nematology, Wageningen, Netherlands Introduction: Microorganisms constitute the main source of biodiversity on Earth and soils are considered to harbour most of this diversity. However, our knowledge about the rules governing diversity patterns comes mainly from the study of aboveground multicellular, conspicuous organisms. Whether soil microorganisms show biogeographical patterns and how these patterns influence their diversity are main questions in ecology. Considering the wide range of methods available to assess the diversity of microorganisms -from the use of selective-culture conditions to single-gene analyses and metagenomics- we discuss which diversity patterns are soundly supported and which ones might be revolutionized by the use of metagenomic data. Material/Methods: We focused on the bacterial communities of temperate semi-natural grasslands in southern UK, where the occurrence of different diversity patterns was assessed by PCR-DGGE analysis of 16S rRNA. Results: In the studied grasslands, 1) the presence/absence of bacterial taxa was related to variation in soil chemistry and plant community composition; 2) independently of the environmental factors, the similarity of bacterial communities decreased with geographic distance in grasslands separated between 1 and ~200 km, and 3) the diversity of bacteria was much lower at the cm scale than expected if the abundances of the different taxa were randomly distributed. Discussion/Conclusions: The results support the view that variation in community composition in response to environmental factors is a common pattern in microorganisms. The choice between different screening methodologies or their combination will probably affect the precision rather than the ability to recognize the pattern itself. On the other hand, the distance effect on community similarity is a striking result for microorganisms, considering their expected dispersion abilities and the relatively short range of distances covered. The observed variation among community similarities suggests that the estimation of distance effects may be limited by the number of taxa detected with our methodology. Metagenomic data would overcome this limitation, probably showing that the distance-decay in community similarity is more common than thought. Moreover, as we showed, this pattern may be associated with the occurrence of strong bacterial interactions at very small spatial scales. A systematic validation of the idea that local processes are major determinants of microbial biogeographical patterns is waiting for the potential of metagenomics to provide extensive information on the communities of bacteria and other soil microorganisms.
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