Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 405688
Title Comparative genomics of the secretome of the Dothideomycete fungus Cladosporium fulvum
Author(s) Burgt, A. van der; Burg, H. van den; Stergiopoulos, I.; Ökmen, B.; Mehrabi, R.; Karimi, M.; Collemare, J.; Beenen, H.; Kema, G.H.J.; Bradshaw, R.; Bahkali, A.; Wit, P.J.G.M. de
Source In: Proceeding of the 26th Fungal Genetics Conference, Asilomar, Pacific Grove, California, USA, 15-20 March 2011. - - p. 133 - 133.
Event 26th Fungal Genetics Conference, Asilomar, Pacific Grove, California, USA, 2011-03-15/2011-03-20
Department(s) Bioinformatics
Laboratory of Phytopathology
PRI BIOINT Moleculair Phytopathology
Publication type Abstract in scientific journal or proceedings
Publication year 2011
Abstract The genome size (ca. 70Mb) of the recently sequenced Dothideomycete fungus Cladosporium fulvum, is about twice that of most sequenced fungal genomes including the related fungi Mycosphaerella graminicola and Dothistroma septosporum, but is about the same as that of M. fijiensis. This is mainly due to the high content of sequence repeats (about 40-50%) originating from transposable elements. Bioinformatic analysis revealed that the highest number of effectors homologous to those reported in C. fulvum is found in D. septosporum. To identify additional effectors and to facilitate the genome annotation, we have performed proteome analyses on the secretome of C. fulvum grown in planta and in vitro. We have identified many novel secreted putative effectors including small cysteine-rich proteins, different classes of proteases, specific cell wall hydolyzing enzymes and proteins of unknown function. For a substantial number of C. fulvum secreted proteases intron retention occurs more frequently than in related fungi
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