Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

    We have a manual that explains all the features 

Record number 409383
Title Use of new generation single nucleotide polymorphism genotyping for rapid development of near-isogenic lines in rice
Author(s) Boualaphanh, C.; Daygon, V.D.; Calingacion, M.N.; Sanitchon, J.; Jothityangkoon, D.; Mumm, R.; Hall, R.D.; Fitgerald, M.A.
Source Crop Science 51 (2011)5. - ISSN 0011-183X - p. 2067 - 2073.
DOI http://dx.doi.org/10.2135/cropsci2011.02.0103
Department(s) PRI BIOS Applied Metabolic Systems
Publication type Refereed Article in a scientific journal
Publication year 2011
Keyword(s) oryza-sativa l. - fragrance - metabolomics - populations - phenotypes - varieties - tomato - marker - grain - gene
Abstract Studies aimed at determining gene function or identity are greatly facilitated by introgression lines and phenotyping tools. However, developing introgression lines can take six to eight generations to reach the desired level of background purity and homozygosity. The objective of this study was to use new generation genome-wide single nucleotide polymorphism (SNP) genotyping, along with a molecular marker for the allele of interest, and a relevant phenotyping tool, to develop research populations with just four generations of backcrossing. Two populations were created for future research on aroma in rice (Oryza sativa L.): one derived from two indica parents and the other from one indica and one tropical japonica parent. The same recurrent parent was used for both populations. Single nucleotide polymorphism genotyping of BC4F2 progeny selected previously on the basis of either a marker for fragrance or the presence of the fragrant compound and on the basis of morphological similarity to the recurrent parent showed that donor introgression ranged from
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