Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 414672
Title Visualization of molecular processes associated with seed dormancy and germination using MapMan
Author(s) Joosen, R.V.L.; Ligterink, W.; Dekkers, S.J.W.; Hilhorst, H.W.M.
Source Seed Science Research 21 (2011)2. - ISSN 0960-2585 - p. 143 - 152.
DOI http://dx.doi.org/10.1017/S0960258510000449
Department(s) Laboratory of Plant Physiology
EPS
Publication type Refereed Article in a scientific journal
Publication year 2011
Keyword(s) arabidopsis-thaliana - gene-expression - genomics - adaptation - maturation - endosperm - selection - release - embryo - cvi
Abstract Seed dormancy and germination involve the concerted operation of molecular and biochemical programmes. It has become feasible to study these processes in great detail, using the current methods for transcriptome, proteome and metabolome analysis. Yet, the large amounts of data generated by these methods are often dazzling and demand efficient tools for data visualization. We have used the freely available PageMan/MapMan package (http://MapMan.gabipd.org) to visualize transcriptome and metabolome changes in Arabidopsis thaliana seeds during dormancy and germination. Using this package we developed two seed-specific MapMan pathways, which efficiently capture the most important molecular processes in seeds. The results demonstrated the usefulness of the PageMan/MapMan package for seed research.
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