Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 425406
Title The tomato genome sequence provides insights into fleshy fruit evolution
Author(s) Sato, S.; Tabata, S.; Hirakawa, H.; Klein Lankhorst, R.M.; Jong, H. de; Ham, R.C.H.J. van; Datema, E.; Smit, S.; Schijlen, E.G.W.M.; Haarst, J.C. van; Peters, S.A.; Henkens, M.H.C.; Staveren, M.J. van; Mooijman, P.J.W.; Hesselink, T.; Belt, J. van de; Szinay, D.; Bai, Y.; Visser, R.G.F.
Source Nature 485 (2012). - ISSN 0028-0836 - p. 635 - 641.
DOI http://dx.doi.org/10.1038/nature11119
Department(s) PPO/PRI Centre for BioSystems Genomics
PRI BIOS Applied Bioinformatics
Bioinformatics
Laboratory of Virology
Laboratory of Nematology
PRI BIOS Applied Metabolic Systems
Laboratory of Genetics
Laboratory of Plant Breeding
EPS-4
Publication type Refereed Article in a scientific journal
Publication year 2012
Keyword(s) lycopersicon-esculentum - gene - diversification - arabidopsis - patterns - ortholog - history - sorghum - potato
Abstract Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera1 and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium2, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.
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