Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 429750
Title Genome update of Botrytis cenerea strains B05.10 and T4
Author(s) Staats, M.; Kan, J.A.L. van
Source Eukaryotic Cell 11 (2012)11. - ISSN 1535-9778 - p. 1413 - 1414.
DOI http://dx.doi.org/10.1128/EC.00164-12
Department(s) Laboratory of Phytopathology
EPS
EPS-2
Publication type Refereed Article in a scientific journal
Publication year 2012
Keyword(s) rna-seq
Abstract We report here an update of the Botrytis cinerea strains B05.10 and T4 genomes, as well as an automated preliminary gene structure annotation. High-coverage de novo assemblies and reference-based alignments led to a correction of wrong base calls, elimination of sequence gaps, and improved joining of contigs. The new assemblies have substantially lower numbers of scaffolds and a concomitant increase in the N50.The list of protein-coding genes was generated using the evidence-driven gene predictor Augustus, with expressed sequence tag evidence and RNA-Seq data as input.
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