Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 444650
Title The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
Author(s) Katayama, T.; Wilkinson, D.W.; Micklem, G.; Kawashima, S.; Yamaguchi, A.; Nakao, M.; Yamamoto, T.; Okamoto, S.; Oouchida, K.; Chung, H.; Aerts, J.; Afzal, H.; Antezana, E.; Arakawa, K.; Aranda, B.; Belleau, F.; Bolleman, J.; Bonnal, R.J.P.; Chapman, B.; Cock, P.J.A.; Eriksson, T.; Gordon, P.M.K.; Goto, N.; Hayashida, K.; Horn, H.; Ishiwata, R.; Kaminuma, E.; Kasprzyk, A.; Kawaji, H.; Kido, N.; Kim, Y.; Kinjo, A.R.; Konishi, F.; Kwon, K.H.; Labarga, A.; Lamprecht, A.; Lin, Y.; Lindenbaum, P.; McCarthy, L.; Morita, H.; Murakami, K.; Nagao, K.; Nishida, K.; Nishimura, K.; Nishizawa, T.; Ogishima, S.; Ono, K.; Oshita, K.; Park, K.; Prins, J.C.P.; Saito, T.; Samwald, M.; Satagopam, V.P.; Shigemoto, Y.; Smith, R.; Splendiani, A.; Sugawara, H.; Taylor, J.; Vos, R.A.; Withers, D.; Yamasaki, C.; Zmasek, C.M.; Kawamoto, S.; Okubo, K.; Asai, K.; Takagi, T.
Source Journal of Biomedical Semantics 4 (2013). - ISSN 2041-1480
Department(s) Laboratory of Nematology
Publication type Refereed Article in a scientific journal
Publication year 2013
Keyword(s) protein-interaction database - systems biology - ontology - bioinformatics - tool - representation - services - language - framework - networks
Abstract Background: BioHackathon 2010 was the third in a series of meetings hosted by the Database Center for Life Sciences (DBCLS) in Tokyo, Japan. The overall goal of the BioHackathon series is to improve the quality and accessibility of life science research data on the Web by bringing together representatives from public databases, analytical tool providers, and cyber-infrastructure researchers to jointly tackle important challenges in the area of in silico biological research. Results: The theme of BioHackathon 2010 was the 'Semantic Web', and all attendees gathered with the shared goal of producing Semantic Web data from their respective resources, and/or consuming or interacting those data using their tools and interfaces. We discussed on topics including guidelines for designing semantic data and interoperability of resources. We consequently developed tools and clients for analysis and visualization. Conclusion: We provide a meeting report from BioHackathon 2010, in which we describe the discussions, decisions, and breakthroughs made as we moved towards compliance with Semantic Web technologies - from source provider, through middleware, to the end-consumer. source provider, through middleware, to the end-consumer.
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