Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 452150
Title Signatures of Diversifying Selection in European Pig Breeds
Author(s) Wilkinson, S.; Lu, Z.H.; Megens, H.J.W.C.; Archibald, A.L.; Haley, C.; Jackson, I.J.; Groenen, M.A.M.; Crooijmans, R.P.M.A.; Ogden, R.; Wiener, P.
Source Plos Genetics 9 (2013)4. - ISSN 1553-7404
DOI https://doi.org/10.1371/journal.pgen.1003453
Department(s) Animal Breeding and Genetics
WIAS
Publication type Refereed Article in a scientific journal
Publication year 2013
Keyword(s) quantitative trait loci - fatty-acid-composition - coat color - artificial selection - kit-ligand - skin pigmentation - complex traits - teat number - wild boar - ear size
Abstract Following domestication, livestock breeds have experienced intense selection pressures for the development of desirable traits. This has resulted in a large diversity of breeds that display variation in many phenotypic traits, such as coat colour, muscle composition, early maturity, growth rate, body size, reproduction, and behaviour. To better understand the relationship between genomic composition and phenotypic diversity arising from breed development, the genomes of 13 traditional and commercial European pig breeds were scanned for signatures of diversifying selection using the Porcine60K SNP chip, applying a between-population (differentiation) approach. Signatures of diversifying selection between breeds were found in genomic regions associated with traits related to breed standard criteria, such as coat colour and ear morphology. Amino acid differences in the EDNRB gene appear to be associated with one of these signatures, and variation in the KITLG gene may be associated with another. Other selection signals were found in genomic regions including QTLs and genes associated with production traits such as reproduction, growth, and fat deposition. Some selection signatures were associated with regions showing evidence of introgression from Asian breeds. When the European breeds were compared with wild boar, genomic regions with high levels of differentiation harboured genes related to bone formation, growth, and fat deposition.
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