Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 501891
Title Corky root severity, root knot nematode galling and microbial communities in soil, rhizosphere and rhizoplane in organic and conventional greenhouse compartments
Author(s) Bruggen, Ariena H.C. van; Narouei-Khandan, Hossein A.; Gravel, Valérie; Blok, W.J.
Source Applied Soil Ecology 100 (2016). - ISSN 0929-1393 - p. 112 - 123.
DOI http://dx.doi.org/10.1016/j.apsoil.2015.11.015
Department(s) Farming Systems Ecology
Biological Farming Systems
Publication type Refereed Article in a scientific journal
Publication year 2016
Keyword(s) Conventional - Disease suppression - Meloidogyne - Microbial community cylcing - Organic - Pyrenochaeta
Abstract

Organic and conventional greenhouse compartments were set up to compare tomato production, disease development and microbial communities in two systems side by side. After one year, the organic greenhouse was split into two sections: one where straw was added to the soil (to reduce soil nitrogen) and the other without straw. This paper reports on naturally emerging corky root (CR) disease and root knot nematode (RKN) galling in the second and third years of the experiment. CR increased over the years in all systems, but earlier in the conventional system, so that there were significant differences between the two organic versus the conventional systems in the second year but not anymore in the third year. RKN galling became apparent in the third year, particularly in the conventional system and rarely in the organic systems. CR severity was significantly negatively correlated with dissolved organic carbon content, total carbon, nitrogen concentrations and oxygen uptake rate in soil, and with tomato yield. RKN galling was too rare to be related to any variables. CR severity classes were significantly separated based on selected operational taxonomic units (OTUs) or phylotypes of 16S rDNA for bacteria and actinomycetes and of 18S rDNA ITS for fungi detected by denaturing gradient gel electrophoresis (DGGE). Microbial communities in the rhizoplane were largely subsets of those in the rhizosphere and bulk soil, but the distributions of OTUs over different habitats were similar for the conventional and recently converted organic systems. These results may stimulate research into selection of microbial communities from one habitat into neighboring ones to support the hypothesis of microbial cycling in ecosystems.

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