Staff Publications

Staff Publications

  • external user (warningwarning)
  • Log in as
  • language uk
  • About

    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

    We have a manual that explains all the features 

Record number 506183
Title A gapless genome sequence of the fungus Botrytis cinerea
Author(s) Kan, Jan A.L. Van; Stassen, Joost H.M.; Mosbach, Andreas; Lee, Theo A.J. Van Der; Faino, Luigi; Farmer, Andrew D.; Papasotiriou, Dimitrios G.; Zhou, Shiguo; Seidl, Michael F.; Cottam, Eleanor; Edel, Dominique; Hahn, Matthias; Schwartz, David C.; Dietrich, Robert A.; Widdison, Stephanie; Scalliet, Gabriel
Source Molecular Plant Pathology 18 (2017)1. - ISSN 1464-6722 - p. 75 - 89.
DOI http://dx.doi.org/10.1111/mpp.12384
Department(s) Laboratory of Phytopathology
EPS
PRI Bioint Diagnostics, Food Safety & Phytosanitary
Publication type Refereed Article in a scientific journal
Publication year 2017
Keyword(s) Genetic map - Grey mould - Optical map - SMRT sequencing
Abstract

Following earlier incomplete and fragmented versions of a genome sequence for the grey mould Botrytis cinerea, a gapless, near-finished genome sequence for B. cinerea strain B05.10 is reported. The assembly comprised 18 chromosomes and was confirmed by an optical map and a genetic map based on approximately 75 000 single nucleotide polymorphism (SNP) markers. All chromosomes contained fully assembled centromeric regions, and 10 chromosomes had telomeres on both ends. The genetic map consisted of 4153 cM and a comparison of the genetic distances with the physical distances identified 40 recombination hotspots. The linkage map also identified two mutations, located in the previously described genes Bos1 and BcsdhB, that conferred resistance to the fungicides boscalid and iprodione. The genome was predicted to encode 11 701 proteins. RNAseq data from >20 different samples were used to validate and improve gene models. Manual curation of chromosome 1 revealed interesting features, such as the occurrence of a dicistronic transcript and fully overlapping genes in opposite orientations, as well as many spliced antisense transcripts. Manual curation also revealed that the untranslated regions (UTRs) of genes can be complex and long, with many UTRs exceeding lengths of 1 kb and possessing multiple introns. Community annotation is in progress.

Comments
There are no comments yet. You can post the first one!
Post a comment
 
Please log in to use this service. Login as Wageningen University & Research user or guest user in upper right hand corner of this page.