Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 535645
Title SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
Author(s) Koehorst, Jasper J.; Dam, Jesse C.J. van; Saccenti, Edoardo; Martins Dos Santos, Vitor A.P.; Suarez-Diez, Maria; Schaap, Peter J.
Source Bioinformatics 34 (2018)8. - ISSN 1367-4803 - p. 1401 - 1403.
DOI http://dx.doi.org/10.1093/bioinformatics/btx767
Department(s) Systems and Synthetic Biology
VLAG
Publication type Refereed Article in a scientific journal
Publication year 2018
Abstract To unlock the full potential of genome data and to enhance data interoperability and reusability of genome annotations we have developed SAPP, a Semantic Annotation Platform with Provenance. SAPP is designed as an infrastructure supporting FAIR de novo computational genomics but can also be used to process and analyze existing genome annotations. SAPP automatically predicts, tracks and stores structural and functional annotations and associated dataset- and element-wise provenance in a Linked Data format, thereby enabling information mining and retrieval with Semantic Web technologies. This greatly reduces the administrative burden of handling multiple analysis tools and versions thereof and facilitates multi-level large scale comparative analysis.
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