Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 539381
Title Genes for seed longevity in barley identified by genomic analysis on near isogenic lines
Author(s) Wozny, Dorothee; Kramer, Katharina; Finkemeier, Iris; Acosta, Ivan F.; Koornneef, Maarten
Source Plant, Cell & Environment 41 (2018)8. - ISSN 0140-7791 - p. 1895 - 1911.
DOI https://doi.org/10.1111/pce.13330
Department(s) Groep KoornneefGroep Koornneef
Laboratory of Genetics
Publication type Refereed Article in a scientific journal
Publication year 2018
Keyword(s) barley natural variation - quantitative trait loci (QTL)
Abstract

Genes controlling differences in seed longevity between 2 barley (Hordeum vulgare) accessions were identified by combining quantitative genetics “omics” technologies in near isogenic lines (NILs). The NILs were derived from crosses between the spring barley landraces L94 from Ethiopia and Cebada Capa from Argentina. A combined transcriptome and proteome analysis on mature, nonaged seeds of the 2 parental lines and the L94 NILs by RNA-sequencing and total seed proteomic profiling identified the UDP-glycosyltransferase MLOC_11661.1 as candidate gene for the quantitative trait loci on 2H, and the NADP-dependent malic enzyme (NADP-ME) MLOC_35785.1 as possible downstream target gene. To validate these candidates, they were expressed in Arabidopsis under the control of constitutive promoters to attempt complementing the T-DNA knockout line nadp-me1. Both the NADP-ME MLOC_35785.1 and the UDP-glycosyltransferase MLOC_11661.1 were able to rescue the nadp-me1 seed longevity phenotype. In the case of the UDP-glycosyltransferase, with high accumulation in NILs, only the coding sequence of Cebada Capa had a rescue effect.

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