Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Mimosoid legume plastome evolution : IR expansion, tandem repeat expansions, and accelerated rate of evolution in clpP
Dugas, D.V. ; Hernandez, David ; Koenen, Erik J.M. ; Schwarz, Erika ; Straub, Shannon ; Hughes, C.E. ; Jansen, R.K. ; Nageswara-Rao, Madhugiri ; Staats, Martijn ; Trujillo, J.T. ; Hajrah, N.H. ; Alharbi, N.S. ; Al-Malki, A.L. ; Sabir, J.S.M. ; Bailey, C.D. - \ 2015
Scientific Reports 5 (2015). - ISSN 2045-2322 - 13 p.

The Leguminosae has emerged as a model for studying angiosperm plastome evolution because of its striking diversity of structural rearrangements and sequence variation. However, most of what is known about legume plastomes comes from few genera representing a subset of lineages in subfamily Papilionoideae. We investigate plastome evolution in subfamily Mimosoideae based on two newly sequenced plastomes (Inga and Leucaena) and two recently published plastomes (Acacia and Prosopis), and discuss the results in the context of other legume and rosid plastid genomes. Mimosoid plastomes have a typical angiosperm gene content and general organization as well as a generally slow rate of protein coding gene evolution, but they are the largest known among legumes. The increased length results from tandem repeat expansions and an unusual 13 kb IR-SSC boundary shift in Acacia and Inga. Mimosoid plastomes harbor additional interesting features, including loss of clpP intron1 in Inga, accelerated rates of evolution in clpP for Acacia and Inga, and dN/dS ratios consistent with neutral and positive selection for several genes. These new plastomes and results provide important resources for legume comparative genomics, plant breeding, and plastid genetic engineering, while shedding further light on the complexity of plastome evolution in legumes and angiosperms.

Strategic double cropping on Vertisols: A viable rainfed cropping option in the Indian SAT to increase productivity and reduce risk
Nageswara Rao, V. ; Meinke, H.B. ; Craufurd, P.Q. ; Parsons, D. ; Kropff, M.J. ; Anten, N.P.R. ; Wani, S.P. ; Rego, T.J. - \ 2015
European Journal of Agronomy 62 (2015). - ISSN 1161-0301 - p. 26 - 37.
nitrogen - field - soil - management - tillage - residue - maize - wheat - yield - corn
Our study suggests the possibility for transformational change in the productivity and risk profile of someof India’s rainfed cropping systems. In the semi-arid regions of Southern India, farmers traditionally cropsorghum or chickpea on Vertisols during the post-rainy season, keeping the fields fallow during the rainyseason. This practice avoids land management problems, but limits the potential for crop intensifica-tion to increase systems productivity. A long-term (15 year) experiment at ICRISAT demonstrated thatcropping during the rainy season is technically feasible, and that grain productivity of double croppedsorghum + chickpea (SCP–SCP) and mung bean + sorghum (MS–MS) sequential systems were higher thantheir conventional counterparts with rainy season fallow, i.e. fallow + post-rainy sorghum (FS–FS) and fal-low + post-rainy chickpea (FS–FCP). Without N application, mean grain yield of post-rainy sorghum in theMS–MS system was significantly greater (2520 kg ha-1per two-year rotation) than in the FS–FS system(1940 kg ha-1per two-year rotation), with the added benefit of the mung bean grain yield (1000 kg ha-1per two-year rotation) from the MS–MS system. In the SCP–SCP system the additional grain yield ofrainy sorghum (3400 kg ha-1per two-year rotation) ensured that the total productivity of this systemwas greater than all other systems. Double cropping MS–MS and SCP–SCP sequential systems had sig-nificantly higher crop N uptake compared to traditional fallow systems at all rates of applied nitrogen(N).The intensified MS–MS and SCP–SCP sequential systems without any N fertilizer applied recorded amuch higher median gross profit of Rs. 20,600 (US $ 375) and Rs. 15,930 (US $ 290) ha-1yr-1, respectively,compared to Rs. 1560 (US $ 28) ha-1yr-1) with the FS–FS system. Applying 120 kg of N ha-1considerablyincreased the profitability of all systems, lifting median gross profits of the sorghum + chickpea systemover Rs. 60,000 (US $ 1091) ha-1yr-1and the conventional system to Rs. 20,570 (US $ 374) ha-1yr-1. Thegross profit margin analysis showed that nitrogen is a key input for improving productivity, particularlyfor the double cropping systems. However, traditional systems are unviable and risky without N appli-cation in the variable climates of the semi-arid tropics. Together, our results show that on Vertisols insemi-arid India, double cropping systems increase systems’ productivity, and are financially more pro-fitability and less risky than traditional fallow post-rainy systems while further benefits can be achievedthrough fertilizer application.
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