Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 445665
Title Genome-wide analysis of coordinated transcript abundance during seed development in different Brassica rapa morphotypes
Author(s) Basnet, R.K.; Moreno Pachón, N.M.; Lin, K.; Bucher, J.; Visser, R.G.F.; Maliepaard, C.A.; Bonnema, A.B.
Source BMC Genomics 14 (2013). - ISSN 1471-2164
DOI https://doi.org/10.1186/1471-2164-14-840
Department(s) Plant Breeding
Laboratory of Plant Physiology
Bioinformatics
Plant Breeding
EPS
Publication type Refereed Article in a scientific journal
Publication year 2013
Keyword(s) gene-expression profiles - false discovery rate - arabidopsis-thaliana - network analysis - prolamin-box - napus - germination - embryo - maize - plant
Abstract Brassica seeds are important as basic units of plant growth and sources of vegetable oil. Seed development is regulated by many dynamic metabolic processes controlled by complex networks of spatially and temporally expressed genes. We conducted a global microarray gene co-expression analysis by measuring transcript abundance of developing seeds from two diverse B. rapa morphotypes: a pak choi (leafy-type) and a yellow sarson (oil-type), and two of their doubled haploid (DH) progenies, (1) to study the timing of metabolic processes in developing seeds, (2) to explore the major transcriptional differences in developing seeds of the two morphotypes, and (3) to identify the optimum stage for a genetical genomics study in B. rapa seed.
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