Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 544812
Title Metagenome analysis reveals yet unexplored reductive dechlorinating potential of Dehalobacter sp. E1 growing in coculture with Sedimentibacter sp.
Author(s) Maphosa, F.; Passel, M.W.J. van; Vos, W.M. de; Smidt, H.
Department(s) Microbiology
Systems and Synthetic Biology
Publication type Dataset
Publication year 2012
Keyword(s) PRJEB385 - Sedimentibacter sp. B4 - Sedimentibacter - CANG01000000 - ERP007936
Abstract Dehalobacter sp. E1 grows in strict coculture with Sedimentibacter sp. B4. The metagenome of the coculture and genome of strain B4 were sequenced. Filtering of the Dehalobacter genome sequence data from the metagenomic sequence of the coculture was done based on BLAST hits and G+C content. The Sedimentibacter genome sequence was used to query the metagenomic coculture sequence. Contigs of more than 150 bp in length, with at least 2 reads, and having no hit with the Sedimentibacter contigs of more than 90% identity for at least 100 bp were binned as Dehalobacter.
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