Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 545371
Title The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet
Author(s) Grum-Grzhimaylo, A.; Falkoski, D.L.; Heuvel, Joost van den; Valero Jimenez, C.A.; Min, B.; Choi, I.G.; Lipzen, A.; Daum, C.G.; Aanen, D.K.; Tsang, A.; Henrissat, B.; Bilanenko, E.N.; Vries, R.P. de; Kan, J.A.L. van; Grigoriev, I.V.; Debets, A.J.M.
Source Molecular Ecology 27 (2018)23. - ISSN 0962-1083 - p. 4808 - 4819.
DOI https://doi.org/10.1111/mec.14912
Department(s) Laboratory of Genetics
Laboratory of Phytopathology
PE&RC
EPS
Publication type Refereed Article in a scientific journal
Publication year 2018
Abstract Sodiomyces alkalinus is one of the very few alkalophilic fungi, adapted to grow optimally at high pH. It is widely distributed at the plant‐deprived edges of extremely alkaline lakes and locally abundant. We sequenced the genome of S. alkalinus and reconstructed evolution of catabolic enzymes, using a phylogenomic comparison. We found that the genome of S. alkalinus is larger, but its predicted proteome is smaller and heavily depleted of both plant‐degrading enzymes and proteinases, when compared to its closest plant‐pathogenic relatives. Interestingly, despite overall losses, S. alkalinus has retained many proteinases families and acquired bacterial cell wall‐degrading enzymes, some of them via horizontal gene transfer from bacteria. This fungus has very potent proteolytic activity at high pH values, but slowly induced low activity of cellulases and hemicellulases. Our experimental and in silico data suggest that plant biomass, a common food source for most fungi, is not a preferred substrate for S. alkalinus in its natural environment. We conclude that the fungus has abandoned the ancestral plant‐based diet and has become specialized in a more protein‐rich food, abundantly available in soda lakes in the form of prokaryotes and small crustaceans.
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