Staff Publications

Refereed article in a journal

2020

• Identification of candidate genes for quantitative downy mildew resistance in cucumber - a review
  Berg, J.A. ; Hermans, F.W.K. ; Vriezen, W.H. ; Bai, Y. ; Schouten, H.J. (2020)
  Acta Horticulturae 1294 . - p. 113 - 120.

• Analysis of QTL DM4.1 for Downy Mildew Resistance in Cucumber Reveals Multiple subQTL : A Novel RLK as Candidate Gene for the Most Important subQTL
  Berg, Jeroen A. ; Hermans, Freddy W.K. ; Beenders, Frank ; Lou, Lina ; Vriezen, Wim H. ; Visser, Richard G.F. ; Bai, Yuling ; Schouten, Henk J. (2020)
  Frontiers in Plant Science 11 .

• Comparative genomics reveals the in planta-secreted Verticillium dahliae Av2 effector protein recognized in tomato plants that carry the V2 resistance locus
  Chavarro-Carrero, Edgar A. ; Vermeulen, Jasper P. ; E. Torres, David ; Usami, Toshiyuki ; Schouten, Henk J. ; Bai, Yuling ; Seidl, Michael F. ; Thomma, Bart P.H.J. (2020)
  Environmental Microbiology .

• Identification of novel loci and candidate genes for cucumber downy mildew resistance using GWAS
  Liu, Xiaoping ; Lu, Hongwei ; Liu, Panna ; Miao, Han ; Bai, Yuling ; Gu, Xingfang ; Zhang, Shengping (2020)
  Plants 9 (12). - p. 1 - 15.

• CRISPR/Cas inactivation of RECQ4 increases homeologous crossovers in an interspecific tomato hybrid
  Maagd, Ruud A. de; Loonen, Annelies ; Chouaref, Jihed ; Pelé, Alexandre ; Meijer-Dekens, Fien ; Fransz, Paul ; Bai, Yuling (2020)
  Plant Biotechnology Journal 18 (3). - p. 805 - 813.

• On the origin and dispersal of cultivated spinach (Spinacia oleracea L.)
  Ribera, Arnau ; Treuren, R. van; Kik, C. ; Bai, Y. ; Wolters, A.M.A. (2020)
  Genetic Resources and Crop Evolution .

• A review on the genetic resources, domestication and breeding history of spinach (Spinacia oleracea L.)
  Ribera, Arnau ; Bai, Y. ; Wolters, A.M.A. ; Treuren, R. van; Kik, C. (2020)
  Euphytica 216 (48). - 21 p.

• CRISPR/Cas9-targeted mutagenesis of the tomato susceptibility gene PMR4 for resistance against powdery mildew
  Santillán Martínez, Miguel I. ; Bracuto, Valentina ; Koseoglou, Eleni ; Appiano, Michela ; Jacobsen, Evert ; Visser, Richard G.F. ; Wolters, Anne-Marie A. ; Bai, Yuling (2020)
  BMC Plant Biology 20 (1).

• The NLR Protein Encoded by the Resistance Gene Ty-2 Is Triggered by the Replication-Associated Protein Rep/C1 of Tomato Yellow Leaf Curl Virus
  Shen, Xuexue ; Yan, Zhe ; Wang, Xiaoxuan ; Wang, Yinlei ; Arens, Marjon ; Du, Yongchen ; Visser, Richard G.F. ; Kormelink, Richard ; Bai, Yuling ; Wolters, Anne Marie A. (2020)
  Frontiers in Plant Science 11 .

• Correlation between total hypha length and haustoria number of Pseudoidium neolycopersici in type I trichome cells of tomato leaves
  Suzuki, T. ; Nakao, Y. ; Ura, R. ; Nakaba, M. ; Nishiyama, T. ; Takikawa, Y. ; Matsuda, Y. ; Kakutani, K. ; Bai, Y. ; Nonomura, T. (2020)
  Australasian Plant Pathology 49 . - p. 451 - 460.

• Ty-1, a universal resistance gene against geminiviruses that is compromised by co-replication of a betasatellite
  Voorburg, Corien M. ; Yan, Zhe ; Bergua-Vidal, Maria ; Wolters, Anne Marie A. ; Bai, Yuling ; Kormelink, Richard (2020)
  Molecular Plant Pathology 21 (2). - p. 160 - 172.

2019

• Breeding Has Increased the Diversity of Cultivated Tomato in The Netherlands
  Schouten, Henk J. ; Tikunov, Yury ; Verkerke, Wouter ; Finkers, Richard ; Bovy, Arnaud ; Bai, Yuling ; Visser, Richard G.F. (2019)
  Frontiers in Plant Science 10 .

2018

• The role of tomato WRKY genes in plant responses to combined abiotic and biotic stresses
  Bai, Yuling ; Sunarti, Sri ; Kissoudis, Christos ; Visser, Richard G.F. ; Linden, C.G. van der (2018)
  Frontiers in Plant Science 9 .

• Plant behaviour under combined stress : tomato responses to combined salinity and pathogen stress
  Bai, Yuling ; Kissoudis, Christos ; Yan, Zhe ; Visser, Richard G.F. ; Linden, Gerard van der (2018)
  The Plant Journal 93 (4). - p. 781 - 793.

• Trichomes: interaction sites of tomato leaves with biotrophic powdery mildew pathogens
  Suzuki, Tomoko ; Murakami, Tomoe ; Takizumi, Yoshihiro ; Ishimaru, Hiroyuki ; Kudo, Daiki ; Takikawa, Yoshihiro ; Matsuda, Yoshinori ; Kakutani, Koji ; Bai, Yuling ; Nonomura, Teruo (2018)
  European Journal of Plant Pathology 150 (1). - p. 115 - 125.

• Resistance to tomato yellow leaf curl virus in tomato germplasm
  Yan, Zhe ; Pérez-de-Castro, Ana ; Díez, Maria J. ; Hutton, Samuel F. ; Visser, Richard G.F. ; Wolters, Anne-Marie A. ; Bai, Yuling ; Li, Junming (2018)
  Frontiers in Plant Science 9 .

2017

• Functional characterization of cucumber (Cucumis sativus L.) Clade V MLO genes
  Berg, Jeroen A. ; Appiano, Michela ; Bijsterbosch, Gerard ; Visser, Richard G.F. ; Schouten, Henk J. ; Bai, Yuling (2017)
  BMC Plant Biology 17 (1).

• Functional characterization of a syntaxin involved in tomato (Solanum lycopersicum) resistance against powdery mildew
  Bracuto, Valentina ; Appiano, Michela ; Zheng, Zheng ; Wolters, Anne-Marie A. ; Yan, Zhe ; Ricciardi, Luigi ; Visser, Richard G.F. ; Pavan, Stefano ; Bai, Yuling (2017)
  Frontiers in Plant Science 8 . - 10 p.

• Functional characterization of the powdery mildew susceptibility gene SmMLO1 in eggplant (Solanum melongena L.)
  Bracuto, Valentina ; Appiano, Michela ; Ricciardi, Luigi ; Göl, Deniz ; Visser, Richard G.F. ; Bai, Yuling ; Pavan, Stefano (2017)
  Transgenic Research 26 (3). - p. 323 - 330.

• Ethylene and abscisic acid signaling pathways differentially influence tomato resistance to combined powdery mildew and salt stress
  Kissoudis, Christos ; Seifi, Alireza ; Yan, Zhe ; Islam, Tanjimul ; Schoot, Hanneke van der; Wiel, Clemens C.M. van de; Visser, Richard G.F. ; Linden, C.G. van der; Bai, Yuling (2017)
  Frontiers in Plant Science 7 .

• Key components of different plant defense pathways are dispensable for powdery mildew resistance of the arabidopsis mlo2 mlo6 mlo12 triple mutant
  Kuhn, Hannah ; Lorek, Justine ; Kwaaitaal, Mark ; Consonni, Chiara ; Becker, Katia ; Micali, Cristina ; Themaat, Emiel Ver Loren Van; Bednarek, Paweł ; Raaymakers, Tom M. ; Appiano, Michela ; Bai, Yuling ; Meldau, Dorothea ; Baum, Stephani ; Conrath, Uwe ; Feussner, Ivo ; Panstruga, Ralph (2017)
  Frontiers in Plant Science 8 .

• Frequency of a natural truncated allele of MdMLO19 in the germplasm of Malus domestica
  Pessina, Stefano ; Palmieri, Luisa ; Bianco, Luca ; Gassmann, Jennifer ; De Weg, Eric Van; Visser, Richard G.F. ; Magnago, Pierluigi ; Schouten, Henk J. ; Bai, Yuling ; Riccardo Velasco, R. ; Malnoy, Mickael (2017)
  Molecular Breeding 37 (1).

• Silencing of DND1 in potato and tomato impedes conidial germination, attachment and hyphal growth of Botrytis cinerea
  Sun, K. ; Tuinen, A. van; Kan, J.A.L. van; Wolters, A.M.A. ; Jacobsen, E. ; Visser, R.G.F. ; Bai, Y. (2017)
  BMC Plant Biology 17 .

2016

• Responses to combined abiotic and biotic stress in tomato are governed by stress intensity and resistance mechanism
  Kissoudis, Christos ; Sri Sunarti, Sri ; De Wiel, Clemens Van; Visser, Richard G.F. ; Linden, Gerard van der; Bai, Yuling (2016)
  Journal of Experimental Botany 67 (17). - p. 5119 - 5132.

• The knock-down of the expression of MdMLO19 reduces susceptibility to powdery mildew (Podosphaera leucotricha) in apple (Malus domestica)
  Pessina, Stefano ; Angeli, Dario ; Martens, Stefan ; Visser, Richard G.F. ; Bai, Yuling ; Salamini, Francesco ; Velasco, Riccardo ; Schouten, Henk J. ; Malnoy, Mickael (2016)
  Plant Biotechnology Journal 14 (10). - p. 2033 - 2044.

• Silencing of six susceptibility genes results in potato late blight resistance
  Sun, Kaile ; Wolters, Anne-Marie A. ; Vossen, Jack H. ; Rouwet, Maarten E. ; Loonen, Annelies E.H.M. ; Jacobsen, Evert ; Visser, Richard G.F. ; Bai, Yuling (2016)
  Transgenic Research 25 (5). - p. 731 - 742.

• Down-regulation of Arabidopsis DND1 orthologs in potato and tomato leads to broad-spectrum resistance to late blight and powdery mildew
  Sun, K. ; Wolters, A.M.A. ; Loonen, A.E.H.M. ; Huibers, R.P. ; Vlugt, R.A.A. van der; Goverse, A. ; Jacobsen, E. ; Visser, R.G.F. ; Bai, Y. (2016)
  Transgenic Research 25 . - p. 123 - 138.

• Genome-wide study of the tomato SlMLO gene family and its functional characterization in response to the powdery mildew fungus oidium neolycopersici
  Zheng, Zheng ; Appiano, Michela ; Pavan, Stefano ; Bracuto, Valentina ; Ricciardi, Luigi ; Visser, Richard G.F. ; Wolters, Anne Marie A. ; Bai, Yuling (2016)
  Frontiers in Plant Science 7 .

2015

• Monocot and dicot MLO powdery mildew susceptibility factors are functionally conserved in spite of the evolution of class-specific molecular features
  Appiano, M. ; Catalano, D. ; Santillan Martinez, M.I. ; Lotti, C. ; Zheng Zheng, Zheng ; Visser, R.G.F. ; Ricciardi, L. ; Bai, Y. ; Pavan, S.N.C. (2015)
  BMC Plant Biology 15 .

• Identification of candidate MLO powdery mildew susceptibility genes in cultivated Solanaceae and functional characterization of tobacco NtMLO1
  Appiano, M. ; Pavan, S.N.C. ; Catalano, D. ; Zheng Zheng, Zheng ; Bracuto, V. ; Lotti, C. ; Visser, R.G.F. ; Ricciardi, L. ; Bai, Y. (2015)
  Transgenic Research 24 (5). - p. 847 - 858.

• A transposable element insertion in the susceptibility gene CsaMLO8 results in hypocotyl resistance to powdery mildew in cucumber
  Berg, J.A. ; Appiano, M. ; Santillán Martínez, M.I. ; Hemans, F.W.K. ; Vriezen, W.H. ; Visser, R.G.F. ; Bai, Y. ; Schouten, H.J. (2015)
  BMC Plant Biology 15 . - 17 p.

• Assessing the genetic variation of Ty-1 and Ty-3 alleles conferring resistance to tomato yellow leaf curl virus in a broad tomato germplasm
  Caro Rios, C.M. ; Verlaan, M.G. ; Julian, O. ; Finkers, H.J. ; Wolters, A.M.A. ; Hutton, S.F. ; Scott, J.W. ; Kormelink, R.J.M. ; Visser, R.G.F. ; Diez, M.J. ; Perez-de-Castro, A. ; Bai, Y. (2015)
  Molecular Breeding 35 . - 13 p.

• Natural loss-of-function mutation of EDR1 conferring resistance to tomato powdery mildew in Arabidopsis thaliana accession C24
  Gao, D. ; Appiano, M. ; Huibers, R.P. ; Loonen, A.E.H.M. ; Visser, R.G.F. ; Wolters, A.M.A. ; Bai, Y. (2015)
  Molecular Plant Pathology 16 (1). - p. 71 - 82.

• Combined biotic and abiotic stress resistance in tomato
  Kissoudis, C. ; Chowdhury, R. ; Heusden, A.W. van; Wiel, C.C.M. van de; Finkers, H.J. ; Visser, R.G.F. ; Bai, Y. ; Linden, C.G. van der (2015)
  Euphytica 202 (2). - p. 317 - 332.

• Detection of an inversion in the Ty-2 region between S. lycopersicum and S. habrochaites by a combination of de novo genome assembly and BAC cloning
  Wolters, A.M.A. ; Caro Rios, C.M. ; Dong, S. ; Finkers, H.J. ; Gao, J. ; Visser, R.G.F. ; Wang, X. ; Du, Y. ; Bai, Y. (2015)
  Theoretical and Applied Genetics 128 (10). - p. 1987 - 1997.

2014

• Tomato yellow leaf curl virus resistance by ty-1 involves increased cytosine methylation of viral genomes and is compromised by cucumber mosaic virus infection
  Butterbach, P.B.E. ; Verlaan, M.G. ; Dullemans, A.M. ; Lohuis, H. ; Visser, R.G.F. ; Bai, Y. ; Kormelink, R.J.M. (2014)
  Proceedings of the National Academy of Sciences of the United States of America 111 (35). - p. 12942 - 12947.

• Activation tagging of ATHB13 in Arabidopsis thaliana confers broad-spectrum disease resistance
  Gao, D. ; Huibers, R.P. ; Chen, X. ; Loonen, A.E.H.M. ; Visser, R.G.F. ; Wolters, A.M.A. ; Bai, Y. (2014)
  Plant Molecular Biology 86 (6). - p. 641 - 653.

• Down-regulation of acetolactate synthase compromises OI-1- mediated resistance to powdery mildew in tomato
  Gao, D. ; Huibers, R.P. ; Loonen, A.E.H.M. ; Visser, R.G.F. ; Wolters, A.M.A. ; Bai, Y. (2014)
  BMC Plant Biology 14 . - 11 p.

• Characterization of the MLO gene family in Rosaceae and gene expression analysis in Malus domestica
  Pessina, S. ; Pavan, S.N.C. ; Catalano, D. ; Gallotta, A. ; Visser, R.G.F. ; Bai, Y. ; Malnoy, M. ; Schouten, H.J. (2014)
  BMC Genomics 15 .

• Identification of candidate genes required for susceptibility to powdery or downy mildew in cucumber
  Schouten, H.J. ; Krauskopf, J. ; Visser, R.G.F. ; Bai, Y. (2014)
  Euphytica 200 (3). - p. 475 - 486.

• Genetics and molecular mechanisms of resistance to powdery mildews in tomato (Solanum lycopersicum) and its wild relatives
  Seifi Abdolabad, A.R. ; Dongli Gao, Dongli ; Zheng, Z. ; Pavan, S.N.C. ; Faino, L. ; Visser, R.G.F. ; Wolters, A.M.A. ; Bai, Y. (2014)
  European Journal of Plant Pathology 138 (3). - p. 641 - 665.

• Breeding for disease resistance by editing plant susceptibility genes
  Sun, K. ; Zheng, Z. ; Jacobsen, E. ; Visser, R.G.F. ; Bai, Y. (2014)
  CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 9 . - 5 p.

• Mapping in the era of sequencing: high density genotyping and its application for mapping TYLCV resistance in Solanum pimpinellifolium
  Viquez-Zamora, M. ; Caro Rios, C.M. ; Finkers, H.J. ; Tikunov, Y.M. ; Bovy, A.G. ; Visser, R.G.F. ; Bai, Y. ; Heusden, A.W. van (2014)
  BMC Genomics 15 . - 10 p.

• Fine mapping of the tomato yellow leaf curl virus resistance gene Ty-2 on chromosome 11 of tomato
  Yang, X. ; Caro Rios, C.M. ; Hutton, S.F. ; Scott, J.W. ; Guo, Y. ; Wang, Xiaoxuan ; Rashid, H. ; Szinay, D. ; Jong, J.H.S.G.M. de; Visser, R.G.F. ; Bai, Y. ; Du, Y. (2014)
  Molecular Breeding 34 (2). - p. 749 - 760.

• The Ph-3 gene from Solanum pimpinellifolium encodes CC-NBS-LRR protein conferring resistance to Phytophthora infestans
  Zhang, C. ; Liu, L. ; Wang, X. ; Vossen, J.H. ; Li, G. ; Li, T. ; Zheng, Z. ; Gao, J. ; Guo, Y. ; Visser, R.G.F. ; Junming Li, J. ; Bai, Y. ; Du, Yongchen (2014)
  Theoretical and Applied Genetics 127 (6). - p. 1353 - 1364.

2013

• Powdery Mildew Resistance in Tomato by Impairment of SIPMR4 and SIDMR1
  Huibers, R.P. ; Loonen, A.E.H.M. ; Dongli Gao, Dongli ; Ackerveken, G. van den; Visser, R.G.F. ; Bai, Y. (2013)
  PLoS ONE 8 (6).

• Genetic mapping of gummy stem blight (Didymella bryoniae) resistance genes in Cucumis sativus-hystrix introgression lines
  Lou, L. ; Wang, H.Y. ; Qian, C.T. ; Liu, J. ; Bai, Y. ; Chen, J.F. (2013)
  Euphytica 192 (3). - p. 359 - 369.

• Identification of a complete set of functional markers for the selection of er1 powdery mildew resistance in Pisum sativum L.
  Pavan, S.N.C. ; Schiavulli, A. ; Appiano, M. ; Miacola, C. ; Visser, R.G.F. ; Bai, Y. ; Lotti, C. ; Ricciardi, L. (2013)
  Molecular Breeding 31 (1). - p. 247 - 253.

• How to effectively deploy plant resistances to pests and pathogens in crop breeding
  Seifi Abdolabad, A.R. ; Visser, R.G.F. ; Bai, Y. (2013)
  Euphytica 190 (3). - p. 321 - 334.

• The Tomato Yellow Leaf Curl Virus Resistance Genes Ty-1 and Ty-3 Are Allelic and Code for DFDGD-Class RNA–Dependent RNA Polymerases
  Verlaan, M.G. ; Hutton, S.F. ; Ibrahem, R.M. ; Kormelink, R.J.M. ; Visser, R.G.F. ; Scott, J.W. ; Edwards, J.D. ; Bai, Y. (2013)
  Plos Genetics 9 (3).

• Fine mapping of the Ph-3 gene conferring resistance to late blight (Phytophthora infestans) in tomato
  Zhang, C.Z. ; Liu, L. ; Zheng, Z. ; Sun, Y.Y. ; Zhou, L.X. ; Yang, Y.H. ; Cheng, F. ; Zhang, Z.H. ; Wang, X.W. ; Huang, S.W. ; Xie, B.Y. ; Du, Y.C. ; Bai, Y. ; Li, J.M. (2013)
  Theoretical and Applied Genetics 126 (10). - p. 2643 - 2653.

• Loss of Function in Mlo Orthologs Reduces Susceptibility of Pepper and Tomato to Powdery Mildew Disease Caused by Leveillula taurica
  Zheng, Z. ; Nonomura, T. ; Appiano, M. ; Pavan, S.N.C. ; Matsuda, Y. ; Toyoda, H. ; Wolters, A.M.A. ; Visser, R.G.F. ; Bai, Y. (2013)
  PLoS ONE 8 (7). - 14 p.

• Detection and Quantification of Leveillula taurica Growth in Pepper Leaves
  Zheng, Z. ; Nonomura, T. ; Bóka, K. ; Matsuda, Y. ; Visser, R.G.F. ; Toyoda, H. ; Kiss, L. ; Bai, Y. (2013)
  Phytopathology 103 (6). - p. 623 - 632.

2012

• Fine mapping of two major QTLs conferring resistance to powdery mildew in tomato
  Faino, L. ; Azizinia, S. ; Houshyani Hassanzadeh, B. ; Verzaux, E.C. ; Ercolano, M.R. ; Visser, R.G.F. ; Bai, Y. (2012)
  Euphytica 184 (2). - p. 223 - 234.

• Characterization of polygenic resistance to powdery mildew in tomato at cytological, biochemical and gene expression level
  Li Chengwei, ; Faino, L. ; Dong, Lin ; Fan, Junmei ; Kiss, L. ; Giovanni, C. de; Lebeda, A. ; Scott, J. ; Matsuda, Y. ; Toyoda, H. ; Lindhout, P. ; Visser, R.G.F. ; Bonnema, A.B. ; Bai, Y. (2012)
  Molecular Plant Pathology 13 (2). - p. 148 - 159.

• Structural homology in the Solanaceae: analysis of genomic regions in support of synteny studies in tomato, potato and pepper
  Peters, S.A. ; Bargsten, J.W. ; Szinay, D. ; Belt, J. van de; Visser, R.G.F. ; Bai, Y. ; Jong, H. de (2012)
  The Plant Journal 71 (4). - p. 602 - 614.

• The tomato genome sequence provides insights into fleshy fruit evolution
  Sato, S. ; Tabata, S. ; Hirakawa, H. ; Klein Lankhorst, R.M. ; Jong, H. de; Ham, R.C.H.J. van; Datema, E. ; Smit, S. ; Schijlen, E.G.W.M. ; Haarst, J.C. van; Peters, S.A. ; Henkens, M.H.C. ; Staveren, M.J. van; Mooijman, P.J.W. ; Hesselink, T. ; Belt, J. van de; Szinay, D. ; Bai, Y. ; Visser, R.G.F. (2012)
  Nature 485 . - p. 635 - 641.

• An avirulent tomato powdery mildew isolate induces localized acquired resistance to a virulent isolate in a spatiotemporal manner
  Seifi, A. ; Nonomura, T. ; Matsuda, Y. ; Toyoda, H. ; Bai, Y. (2012)
  Molecular Plant-Microbe Interactions 25 (3). - p. 372 - 378.

• Chromosome evolution in Solanum traced by cross-species BAC-FISH
  Szinay, D. ; Wijnker, E. ; Berg, R.G. van den; Visser, R.G.F. ; Jong, J.H.S.G.M. de; Bai, Y. (2012)
  New Phytologist 195 (3). - p. 688 - 698.

2011

• Identification and mapping of quantitative resistance to late blight (Phytophthora infestans) in Solanum habrochaites LA1777
  Junming Li, J. ; Liu, L. ; Bai, Y. ; Finkers, H.J. ; Visser, R.G.F. ; Heusden, A.W. van (2011)
  Euphytica 179 (3). - p. 427 - 438.

• Seedling salt tolerance in tomato
  Junming Li, J. ; Liu, L. ; Bai, Y. ; Zhang, Pujuan ; Finkers, H.J. ; Du, Y. ; Visser, R.G.F. ; Heusden, A.W. van (2011)
  Euphytica 178 (3). - p. 403 - 414.

• Pea powdery mildew er1 resistance is associated to loss-of-function mutations at a MLO homologous locus
  Pavan, S.N.C. ; Schiavulli, A. ; Appiano, M. ; Visser, R.G.F. ; Bai, Y. (2011)
  Theoretical and Applied Genetics 123 (8). - p. 1425 - 1431.

• Differential expression of TIR-like genes embedded in the M1-1 gene cluster in nematode-resistant and -susceptible tomato roots
  Seifi Abdolabad, A.R. ; Visser, R.G.F. ; Bai, Y. (2011)
  Journal of Plant Pathology: rivista di patologia vegetale 93 (3). - p. 701 - 706.

• Linked, if not the same, Mi-1 homologues confer resistance to tomato powdery mildew and root-knot nematodes
  Seifi Abdolabad, A.R. ; Kaloshian, I. ; Vossen, J. ; Che, D. ; Bhattarai, K. ; Fan, J. ; Naher, Z. ; Goverse, A. ; Tjallingii, W.F. ; Lindhout, P. ; Visser, R.G.F. ; Bai, Y. (2011)
  Molecular Plant-Microbe Interactions 24 (4). - p. 441 - 450.

• Chromosomal rearrangements between tomato and Solanum chilense hamper mapping and breeding of the TYLCV resistance gene Ty-1
  Verlaan, M.G. ; Szinay, D. ; Hutton, S.F. ; Jong, J.H. de; Kormelink, R.J.M. ; Visser, R.G.F. ; Scott, J.W. ; Bai, Y. (2011)
  The Plant Journal 68 (6). - p. 1093 - 1103.

2010

• Loss of susceptibility as a novel breeding strategy for durable and broad-spectrum resistance
  Pavan, S.N.C. ; Jacobsen, E. ; Visser, R.G.F. ; Bai, Y. (2010)
  Molecular Breeding 25 . - p. 1 - 12.

• FISH applications for genomics and plant breeding strategies in tomato and other Solanaceous crops
  Szinay, D. ; Bai, Y. ; Visser, R.G.F. ; Jong, J.H. de (2010)
  Cytogenetic and Genome Research 129 (1-3). - p. 199 - 210.

• Identification of tomato phosphatidylinositol-specific phospholipase-C (PI-PLC) family members and the role of PLC4 and PLC6 in HR and disease resistance
  Vossen, J.H. ; Abd-El-Haliem, A. ; Fradin, E.F. ; Berg, G.C.M. van den; Ekengren, S.K. ; Meijer, H.J.G. ; Seifi Abdolabad, A.R. ; Bai, Y. ; Have, A. ten; Munnik, T. ; Thomma, B.P.H.J. ; Joosten, M.H.A.J. (2010)
  The Plant Journal 62 (2). - p. 224 - 239.

2009

• Solanum lycopersicum cv. Heinz 1706 chromosome 6: distribution and abundance of genes and retrotransposable elements
  Peters, S.A. ; Datema, E. ; Szinay, D. ; Staveren, M.J. van; Schijlen, E.G.W.M. ; Haarst, J.C. van; Hesselink, T. ; Abma-Henkens, M.H.C. ; Bai, Y. ; Jong, J.H. de; Stiekema, W. ; Klein Lankhorst, R.M. ; Ham, R.C.H.J. van (2009)
  The Plant Journal 58 (5). - p. 857 - 869.

2008

• Naturally occurring broad-spectrum powdery mildw resistance in a central American tomato accession is caused by loss of Mlo function
  Bai, Y. ; Pavan, S.N.C. ; Zheng, Z. ; Zappel, N.F. ; Reinstadler, A. ; Lotti, C. ; Giovanni, C. de; Ricciardi, L. ; Lindhout, P. ; Visser, R.G.F. ; Theres, K. ; Panstruga, R. (2008)
  Molecular Plant-Microbe Interactions 21 (1). - p. 30 - 39.

• Quantitative resistance to Botrytis cinerea from Solanum neorickii
  Finkers, H.J. ; Bai, Y. ; Berg, P.M.M.M. van den; Berloo, R. van; Meijer-Dekens, R.G. ; Have, A. ten; Kan, J.A.L. van; Lindhout, P. ; Heusden, A.W. van (2008)
  Euphytica 159 (1-2). - p. 83 - 92.

• Natural genetic resources of Arabidopsis thaliana reveal a high prevalence and unexpected phenotypic plasticity of RPW8-mediated powdery mildew resistance
  Gollner, K. ; Schweizer, P. ; Bai, Y. ; Panstruga, R. (2008)
  New Phytologist 177 (3). - p. 725 - 742.

• Oidium neolycopersici: Intra-specific variability inferred from AFLP analysis and relationship with closely related powdery mildew fungi infecting various plant species
  Jankovics, T. ; Bai, Y. ; Kovacs, G.M. ; Bardin, M. ; Nicot, P.C. ; Toyoda, H. ; Matsuda, Y. ; Niks, R.E. ; Kiss, L. (2008)
  Phytopathology 98 . - p. 529 - 540.

• Map - vs. homology - based cloning for the recessive gene ol-2 conferring resistance to tomato powdery mildew
  Pavan, S.N.C. ; Zheng, Z. ; Borisova, M. ; Berg, P.M.M.M. van den; Lotti, C. ; Giovanni, C. de; Lindhout, P. ; Jong, J.H. de; Ricciardi, L. ; Visser, R.G.F. ; Bai, Y. (2008)
  Euphytica 162 (1). - p. 91 - 98.

• High-resolution chromosome mapping of BACs using multi-colour FISH and pooled-BAC FISH as a backbone for sequencing tomato chromosome 6
  Szinay, D. ; Chang, S.B. ; Khrustaleva, L.I. ; Peters, S.A. ; Schijlen, E.G.W.M. ; Bai, Y. ; Stiekema, W. ; Ham, R.C.H.J. van; Jong, H. de; Klein Lankhorst, R.M. (2008)
  The Plant Journal 56 (4). - p. 627 - 637.

• Cross-species BAC-FISH painting of the tomato and potato chromosome 6 reveals undescribed chromosomal rearrangements
  Tang, X. ; Szinay, D. ; Ramanna, M.S. ; Vossen, E.A.G. van der; Datema, E. ; Klein Lankhorst, R.M. ; Boer, J.M. de; Peters, S.A. ; Bachem, C.W.B. ; Stiekema, W.J. ; Visser, R.G.F. ; Jong, J.H. de; Bai, Y. (2008)
  Genetics 180 . - p. 1319 - 1328.

2007

• Domestication and breeding of tomatoes: what have we gained and what can we gain in the future?
  Bai, Y. ; Lindhout, P. (2007)
  Annals of Botany 100 (5). - p. 1085 - 1094.

• Biochemical and molecular mechanisms involved in monogenic resistance responses to tomato powdery mildew
  Li Chengwei, ; Bonnema, A.B. ; Che, D. ; Dong, L. ; Lindhout, P. ; Visser, R.G.F. ; Bai, Y. (2007)
  Molecular Plant-Microbe Interactions 20 (9). - p. 1161 - 1172.

• Further isolation of AFLP and LMS markers for the mapping of the Ol-2 locus related to powdery mildew (Oidium neolycopersici) resistance in tomato (Solanum lycopersicum L.)
  Ricciardi, L. ; Lotti, C. ; Pavan, S.N.C. ; Bai, Y. ; Lindhout, P. ; Giovanni, C. de (2007)
  Plant Science 172 (4). - p. 746 - 755.

2006

• Tomato defense to the powdery mildew fungus: differences in expression of genes in susceptible, monogenic- and polygenic resistance responses are mainly in timing
  Li Chengwei, ; Bai, Y. ; Jacobsen, E. ; Visser, R.G.F. ; Lindhout, P. ; Bonnema, A.B. (2006)
  Plant Molecular Biology 62 (1-2). - p. 127 - 140.

2005

• Tomato defense to Oidium neolycopersici: Dominant Ol genes confer isolate-dependent resistance via a different mechanism than recessive ol-2
  Bai, Y. ; Hulst, R.G.M. van der; Bonnema, A.B. ; Marcel, T.C. ; Meijer-Dekens, R.G. ; Niks, R.E. ; Lindhout, W.H. (2005)
  Molecular Plant-Microbe Interactions 18 (4). - p. 354 - 362.

2004

• Mapping Ol-4, a gene conferring resistance to Oidium neolycopersici and originating from Lycopersicon peruvianum LA2172, requires multi-allelic single locus markers
  Bai, Y. ; Hulst, R.G.M. van der; Huang, C.C. ; Wei, L. ; Stam, P. ; Lindhout, W.H. (2004)
  Theoretical and Applied Genetics 109 (6). - p. 1215 - 1223.

• A set of simple PCR markers converted from sequence specific RFLP markers on tomato Chromosomes 9 to 12
  Bai, Y. ; Feng, X. ; Hulst, R.G.M. van der; Lindhout, W.H. (2004)
  Molecular Breeding 13 (3). - p. 281 - 287.

2003

• QRLs for tomato powdery mildew resisance (Oidium lycopersici) in Lycopersicon parviflorum G1.1601 colocalize with two qualitative powdery mildew resistance genes
  Bai, Y. ; Huang, C.C. ; Hulst, R.G.M. van der; Meijer-Dekens, R.G. ; Bonnema, A.B. ; Lindhout, W.H. (2003)
  Molecular Plant-Microbe Interactions 16 . - p. 169 - 176.

Books

2019

• Breeding crops with resistance to diseases and pests
  Niks, R.E. ; Parlevliet, J.E. ; Lindhout, P. ; Bai, Y. (2019)
  Wageningen : Wageningen Academic Publishers, - 204

2011

• Breeding crops with resistance to diseases and pests
  Niks, R.E. ; Parlevliet, J.E. ; Lindhout, P. ; Bai, Y. (2011)
  Wageningen : Wageningen Academic Publishers, - 198

Refereed book chapters

2016

• Towards Sustainable Potato Late Blight Resistance by Cisgenic R Gene Pyramiding
  Kwang-Ryong Jo, ; Zhu, S. ; Bai, Y. ; Hutten, R.C.B. ; Kessel, G.J.T. ; Vleeshouwers, V.G.A.A. ; Jacobsen, E. ; Visser, R.G.F. ; Vossen, J.H. (2016)
  In: Plant Pathogen Resistance Biotechnology / Collinge, David B., Hoboken, NJ : John Wiley and Sons, - p. 171 - 191.

Non-refereed book chapters

2009

• Solanum lycopersicum (Tomato)
  Pavan, S.N.C. ; Heusden, A.W. van; Bai, Y. (2009)
  In: Encyclopedia of Life Sciences Wiley & Sons,

PhD Theses internally prepared

2004

• The genetics and mechanisms of resistance to tomato powdery mildew (Oidium neolycopersici) in Lycopersicon species
  Bai, Y. (2004)
  Wageningen University. Promotor(en): P. Stam, co-promotor(en): Pim Lindhout; Guusje Bonnema. - Wageningen : S.n., - 103

Refereed conference paper

2018

• Tomato disease resistances in the post-genomics era
  Bai, Yuling ; Yan, Zhe ; Moriones, E. ; Fernández-Muñoz, R. (2018)
  In: Proceedings of the 5th International Symposium on Tomato Diseases. - International Society for Horticultural Science, (Acta Horticulturae ) V International Symposium on Tomato Diseases, Málaga, 2016-06-13/2016-06-16 - p. 1 - 17.

2013

• Lack of susceptibility factors: a novel breeding strategy for durable resistance
  Bai, Y. ; Zheng, Z. ; Visser, R.G.F. (2013)

2012

• Fish as a diagnostic tool in introgression breeding
  Bai, Y. ; Szinay, D. ; Jong, H. de; Visser, R.G.F. (2012)
  In: Proceedings of the 19th Eucarpia General Congress, 21-24 May 2012, Budapest, Hungary. - - p. 201 - 204.

• Chromosome evolution in Solanum
  Szinay, D. ; Wijnker, T.G. ; Berg, R.G. van den; Visser, R.G.F. ; Bai, Y. ; Jong, H. de (2012)
  In: Proceedings of the 19th Eucarpia General Congress, 21-24 May 2012, Budapest, Hungary. - - p. 285 - 285.

2006

• Tomato defense to powdery mildew
  Bai, Y. ; Li Chengwei, ; Bonnema, A.B. ; Lindhout, W.H. (2006)
  In: Biology of plant-microbe interactions. - St. Paul, Minnesota : International Society for Molecular Plant-Microbe Interactions, 12th International Congress on Molecular Plant-Microbe Interactions, 2005-12-14/2005-12-16 - p. 565 - 568.

Article in journal

2017

• Obtaining disease resistance by changing S-genes
  Schouten, H.J. ; Bai, Y. (2017)
  Prophyta Annual 2017 . - p. 44 - 45.

2010

• Gen uitzetten maakt tomaat resistent tegen meeldauw : ook meeldauw in roos te ‘bestrijden’ door stilleggen van genen
  Bai, Y. ; Jacobsen, E. ; Heuvelink, E. ; Kierkels, T. (2010)
  Onder Glas 7 (6/7). - p. 28 - 29.

Reports

2015

• Progress Report China Potato GAP project; Late blight control, seed quality, storage facilities and sustainability studies in Heilongjiang province and communications
  Kempenaar, C. ; Kessel, G.J.T. ; Wustman, R. ; Pronk, A.A. ; Haverkort, A.J. ; Ruijter, F.J. de; Lyu, D. ; Wan, S. ; Fan, G. ; Bai, Y. ; Min, F. ; Guo, M. ; Zhang, S. ; Yang, S. ; Gao, Y. (2015)
  Wageningen : Plant Research International, (Report / Plant Research International 608) - 73

Patent

2012

• TYCLV resistance
  Bai, Y. ; Verlaan, M.G. ; Hutton, Samuel (2012)
  Octrooinummer: WO2012125025, gepubliceerd: 2012-09-20.

Abstract

2014

• Improving Pathogen Resistance by Exploiting Plant Susceptibility Genes in Coffee
  Visser, R.G.F. ; Meijboom, P. ; Bai, Y. (2014)
  In: 25th International Conference on Coffee Science Armenia (Colombia). - Armenia-Quindio (Colombia) : ASIC and FNC, 25th International Conference on Coffee Science, Armenia - Quindio, Colombia, 2014-09-08/2014-09-13 - p. 42 - 47.

2011

• Transcriptome analysis on Verticillium-infected tomato to identify genes involved in host defense
  Yanes Paz, E. ; Rehman, S. ; Bai, Y. ; Santos Bermudez, R. ; Borrás-Hidalgo, O. ; Thomma, B.P.H.J. (2011)
  In: Book of Abstracts of the EPS PhD Autumn School 'Host-Microbe Interactomics', Wageningen, The Netherlands, 1-3 November 2011. - Wageningen, The Netherlands : EPS PhD Autumn School 'Host-Microbe Interactomics', Wageningen, The Netherlands, 2011-11-01/2011-11-03 - p. 48 - 49.

2010

• The role of phospholipid signaling in plant defence
  Abd-El-Haliem, A. ; Vossen, J.H. ; Fradin, E.F. ; Berg, G.C.M. van den; Ekengren, S.K. ; Meijer, H.J.G. ; Seifi Abdolabad, A.R. ; Bai, Y. ; Have, A. ten; Munnik, T. ; Thomma, B.P.H.J. ; Joosten, M.H.A.J. (2010)
  In: Book of Abstracts Keystone Symposia on Molecular and Cellular Biology, Tahoe City, California, USA, 14-19 March 2010. - - p. 66 - 66.

2009

• cDNA-AFLP analysis of interactions between Verticillium and tomato
  Rehman, S. ; Bai, Y. ; Thomma, B.P.H.J. (2009)
  In: ISMPMI International Congress abstracts, Quebec City, Canada, 19-23 July 2009. - - p. 124 - 124.

2000

• Genetic analysis of Fusarium oxysporum f.sp. lycopersisi resistance from Lycopersicon chilense Gl.1556
  Bai, Y. ; Berg, P. van den; Lindhout, P. ; Bonnema, G. (2000)
  In: Int.Symposium on Biotechnology application in horticultural crops, Beijing, 2000

• QTL mapping of resistance to Oidium lycopersicum in the wild tomato Lycopersicon parviflorum
  Bai, Y. ; Huang, C. ; Lindhout, P. (2000)
  In: Durable Disease Resistance : Durable Resistance, Ede-Wageningen, 2000 - p. 71 - 71.

• A new source of resistance to Fusarium oxysporum f.sp. lycopersici (Fol) in tomato: towards cloning of Fol race 1 resistance from L. chilense G1.1556
  Bonnema, G. ; Bai, Y. ; Berg, P. van den; Lindhout, P. (2000)
  In: Durable Disease Resistance : Durable Resistance, Ede-Wageningen, 2000. - [S.l.] : [s.n.], 2000 - p. 73 - 73.

Remaining Output

2020

• Solanum lycopersicum callose synthase 12 gene, partial cds
  Santillán Martínez, Miguel I. ; Bracuto, Valentina ; Koseoglou, Eleni ; Appiano, Michela ; Jacobsen, Evert ; Visser, Richard G.F. ; Wolters, Anne-Marie A. ; Bai, Yuling (2020)
  Wageningen University & Research,

2017

• Functional characterization of cucumber (Cucumis sativus L.) Clade V MLO genes
  Berg, J.A. ; Appiano, Michela ; Bijsterbosch, G. ; Visser, R.G.F. ; Schouten, H.J. ; Bai, Y. (2017)

2016

• Supplementary data: Combined biotic and abiotic stress resistance in tomato
  Kissoudis, C. ; Chowdhury, Rawnaq ; Heusden, A.W. van; Wiel, C.C.M. van de; Finkers, H.J. ; Visser, R.G.F. ; Bai, Y. ; Linden, C.G. van der (2016)
  Wageningen UR,

• Supplementary data: Responses to combined abiotic and biotic stress in tomato are governed by stress intensity and mechanism of resistance
  Kissoudis, C. ; Sri Sunarti, Sri ; Wiel, C.C.M. van de; Visser, R.G.F. ; Linden, C.G. van der; Bai, Y. (2016)
  Wageningen UR,

• Supplementary data: Hormone signalling regulation of tomato response to combined biotic and abiotic stress
  Kissoudis, C. ; Sri Sunarti, Sri ; Wiel, C.C.M. van de; Visser, R.G.F. ; Linden, C.G. van der; Bai, Y. (2016)
  Wageningen UR,

• Supplementary data: Roles and contribution of tomato WRKY genes to salt stress and powdery mildew resistance
  Kissoudis, C. ; Gao, D. ; Pramanik, Dewi ; Birhanu, Mengistu ; Wiel, C.C.M. van de; Visser, R.G.F. ; Bai, Y. ; Linden, C.G. van der (2016)
  Wageningen UR,

2014

• XVIIIth Eucarpia Meeting of the Tomato Working Group
  Bai, Yuling (2014)

2012

• Novel breeding tools and strategies in the Genomics Era
  Bai, Yuling (2012)

• An EMS population of tomato cultivar Micro-Tom. In search of durable disease resistance
  Tuinen, A. van; Schipper, E.H. ; Kaur, Ujjal ; Rochette, A. ; Meijer-Dekens, R.G. ; Bai, Y. (2012)