Staff Publications

Refereed article in a journal

2019

• Multiplex genome editing of microorganisms using CRISPR-Cas
  Adiego-Pérez, Belén ; Randazzo, Paola ; Daran, Jean Marc ; Verwaal, René ; Roubos, Johannes A. ; Daran-Lapujade, Pascale ; Oost, John van der (2019)
  FEMS Microbiology Letters 366 (8).

• Harnessing type I CRISPR–Cas systems for genome engineering in human cells
  Cameron, Peter ; Coons, Mary M. ; Klompe, Sanne E. ; Lied, Alexandra M. ; Smith, Stephen C. ; Vidal, Bastien ; Donohoue, Paul D. ; Rotstein, Tomer ; Kohrs, Bryan W. ; Nyer, David B. ; Kennedy, Rachel ; Banh, Lynda M. ; Williams, Carolyn ; Toh, Mckenzi S. ; Irby, Matthew J. ; Edwards, Leslie S. ; Lin, Chun Han ; Owen, Arthur L.G. ; Künne, Tim ; Oost, John van der; Brouns, Stan J.J. ; Slorach, Euan M. ; Fuller, Chris K. ; Gradia, Scott ; Kanner, Steven B. ; May, Andrew P. ; Sternberg, Samuel H. (2019)
  Nature Biotechnology .

• Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
  Carrión, Víctor J. ; Perez-Jaramillo, Juan ; Cordovez, Viviane ; Tracanna, Vittorio ; Hollander, Mattias De; Ruiz-Buck, Daniel ; Mendes, Lucas W. ; Ijcken, Wilfred F.J. van; Gomez-Exposito, Ruth ; Elsayed, Somayah S. ; Mohanraju, Prarthana ; Arifah, Adini ; Oost, John van der; Paulson, Joseph N. ; Mendes, Rodrigo ; Wezel, Gilles P. van; Medema, Marnix H. ; Raaijmakers, Jos M. (2019)
  Science 366 (6465). - p. 606 - 612.

• Bicistronic Design-Based Continuous and High-Level Membrane Protein Production in Escherichia coli
  Claassens, Nico J. ; Finger-Bou, Max ; Scholten, Bart ; Muis, Frederieke ; Groot, Jonas J. De; Gier, Jan Willem De; Vos, Willem M. De; Oost, John Van Der (2019)
  ACS synthetic biology 8 (7). - p. 1685 - 1690.

• Argonaute bypasses cellular obstacles without hindrance during target search
  Cui, Tao Ju ; Klein, Misha ; Hegge, Jorrit W. ; Chandradoss, Stanley D. ; Oost, John van der; Depken, Martin ; Joo, Chirlmin (2019)
  Nature Communications 10 .

• Adaptation and application of a two-plasmid inducible CRISPR-Cas9 system in Clostridium beijerinckii
  Diallo, M. ; Hocq, Rémi ; Collas, Florent ; Chartier, Gwladys ; Wasels, François ; Wijaya, Hani Surya ; Werten, Marc W.T. ; Wolbert, Emil J.H. ; Kengen, Servé W.M. ; Oost, John van der; Ferreira, Nicolas Lopes ; López-Contreras, A.M. (2019)
  Methods : a companion to Methods in enzymology . - 10 p.

• The Use of Defined Microbial Communities To Model Host-Microbe Interactions in the Human Gut
  Elzinga, Janneke ; Oost, John van der; Vos, Willem M. de; Smidt, Hauke (2019)
  Microbiology and Molecular Biology Reviews 83 (2). - p. 1 - 40.

• DNA-guided DNA cleavage at moderate temperatures by Clostridium butyricum Argonaute
  Hegge, Jorrit W. ; Swarts, Daan C. ; Chandradoss, Stanley D. ; Cui, Tao Ju ; Kneppers, Jeroen ; Jinek, Martin ; Joo, Chirlmin ; Oost, John van der (2019)
  Nucleic acids research 47 (11). - p. 5809 - 5821.

• Incorporation of a Synthetic Amino Acid into dCas9 Improves Control of Gene Silencing
  Koopal, Balwina ; Kruis, Aleksander J. ; Claassens, Nico J. ; Nobrega, Franklin L. ; Oost, John Van Der (2019)
  ACS synthetic biology 8 (2). - p. 216 - 222.

• Efficient Cas9-based genome editing of Rhodobacter sphaeroides for metabolic engineering
  Mougiakos, Ioannis ; Orsi, Enrico ; Ghiffary, Mohammad Rifqi ; Post, Wilbert ; Maria, Alberto de; Adiego-Perez, Belén ; Kengen, Servé W.M. ; Weusthuis, Ruud A. ; Oost, John van der (2019)
  Microbial Cell Factories 18 (1). - 1 p.

• CRISPR-Cas ribonucleoprotein mediated homology-directed repair for efficient targeted genome editing in microalgae Nannochloropsis oceanica IMET1
  Naduthodi, Mihris Ibnu Saleem ; Mohanraju, Prarthana ; Südfeld, Christian ; Adamo, Sarah D'; Barbosa, Maria J. ; Oost, John Van Der (2019)
  Biotechnology for Biofuels 12 (1).

• Improved protein production and codon optimization analyses in Escherichia coli by bicistronic design
  Nieuwkoop, Thijs ; Claassens, Nico J. ; Oost, John van der (2019)
  Microbial Biotechnology 12 (1). - p. 173 - 179.

• Microbial Diversity and Organic Acid Production of Guinea Pig Faecal Samples
  Palakawong Na Ayudthaya, Susakul ; Oost, Hans van der; Oost, John van der; Vliet, Daan M. van; Plugge, Caroline M. (2019)
  Current Microbiology 76 (4). - p. 425 - 434.

• Addiction systems antagonize bacterial adaptive immunity
  Sluijs, Lisa van; Houte, Stineke van; Oost, John van der; Brouns, Stan J.J. ; Buckling, Angus ; Westra, Edze R. (2019)
  FEMS Microbiology Letters 366 (5).

• Distant Non-Obvious Mutations Influence the Activity of a Hyperthermophilic Pyrococcusfuriosus Phosphoglucose Isomerase
  Subramanian, Kalyanasundaram ; Mitusińska, Karolina ; Raedts, John ; Almourfi, Feras ; Joosten, Henk Jan ; Hendriks, Sjon ; Sedelnikova, Svetlana E. ; Kengen, Servé W.M. ; Hagen, Wilfred R. ; Góra, Artur ; Martins Dos Santos, Vitor A.P. ; Baker, Patrick J. ; Oost, John van der; Schaap, Peter J. (2019)
  Biomolecules 9 (6).

• Bowel Biofilms: Tipping Points between a Healthy and Compromised Gut?
  Tytgat, Hanne L.P. ; Nobrega, Franklin L. ; Oost, John van der; Vos, Willem M. de (2019)
  Trends in Microbiology 27 (1). - p. 17 - 25.

• Nature of Amorphous Hydrophilic Block Affects Self-Assembly of an Artificial Viral Coat Polypeptide
  Willems, Lione ; Westerveld, Larissa Van; Roberts, Stefan ; Weitzhandler, Isaac ; Calcines Cruz, Carlos ; Hernandez-Garcia, Armando ; Chilkoti, Ashutosh ; Mastrobattista, Enrico ; Oost, John Van Der; Vries, Renko De (2019)
  Biomacromolecules 20 (10). - p. 3641 - 3647.

• Inducible Fibril Formation of Silk-Elastin Diblocks
  Willems, Lione ; Roberts, Stefan ; Weitzhandler, Isaac ; Chilkoti, Ashutosh ; Mastrobattista, Enrico ; Oost, John Van Der; Vries, Renko De (2019)
  ACS Omega 4 (5). - p. 9135 - 9143.

2018

• Mining for novel bacterial defence systems
  Barrangou, Rodolphe ; Oost, John van der (2018)
  Nature Microbiology 3 . - p. 535 - 536.

• Converting Escherichia coli into an archaebacterium with a hybrid heterochiral membrane
  Caforio, Antonella ; Siliakus, Melvin F. ; Exterkate, Marten ; Jain, Samta ; Jumde, Varsha R. ; Andringa, Ruben L.H. ; Kengen, Servé W.M. ; Minnaard, Adriaan J. ; Driessen, Arnold J.M. ; Oost, John van der (2018)
  Proceedings of the National Academy of Sciences of the United States of America 115 (14). - p. 3704 - 3709.

• Engineering Geobacillus thermodenitrificans to introduce cellulolytic activity; expression of native and heterologous cellulase genes
  Daas, Martinus J.A. ; Nijsse, Bart ; Weijer, Antonius H.P. van de; Groenendaal, Bart W.A.J. ; Janssen, Fons ; Oost, John van der; Kranenburg, Richard van (2018)
  BMC Biotechnology 18 (1).

• Complete Genome Sequence of Geobacillus thermodenitrificans T12, A Potential Host for Biotechnological Applications
  Daas, Tijn ; Vriesendorp, Bastienne ; Weijer, Tom van de; Oost, John van der; Kranenburg, Richard van (2018)
  Current Microbiology 75 (1). - p. 49 - 56.

• Prokaryotic Argonaute proteins : novel genome-editing tools?
  Hegge, Jorrit W. ; Swarts, Daan C. ; Oost, John van der (2018)
  Nature Reviews Microbiology 16 (1). - p. 5 - 11.

• Contribution of Eat1 and other alcohol acyltransferases to ester production in Saccharomyces cerevisiae
  Kruis, A.J. ; Gallone, Brigida ; Jonker, T. ; Mars, A.E. ; Rijswijck, I.M.H. van; Wolkers-Rooijackers, J.C.M. ; Smid, E.J. ; Steensels, Jan ; Verstrepen, Kevin J. ; Kengen, S.W.M. ; Oost, J. van der; Weusthuis, R.A. (2018)
  Frontiers in Microbiology 9 . - 11 p.

• The alcohol acetyltransferase Eat1 is located in yeast mitochondria
  Kruis, A.J. ; Mars, A.E. ; Kengen, S.W.M. ; Borst, J.W. ; Oost, J. van der; Weusthuis, R.A. (2018)
  Applied and Environmental Microbiology 84 (19). - p. 1 - 11.

• Exploration and exploitation of the environment for novel specialized metabolites
  Loureiro, Catarina ; Medema, Marnix H. ; Oost, John van der; Sipkema, Detmer (2018)
  Current Opinion in Biotechnology 50 . - p. 206 - 213.

• Hijacking CRISPR-Cas for high-throughput bacterial metabolic engineering : advances and prospects
  Mougiakos, Ioannis ; Bosma, Elleke F. ; Ganguly, Joyshree ; Oost, John van der; Kranenburg, Richard van (2018)
  Current Opinion in Biotechnology 50 . - p. 146 - 157.

• Progress of CRISPR-Cas based genome editing in Photosynthetic microbes
  Naduthodi, M.I.S. ; Barbosa, M.J. ; Oost, J. van der (2018)
  Biotechnology Journal 13 (9).

• Bacteriophage DNA glucosylation impairs target DNA binding by type I and II but not by type V CRISPR–Cas effector complexes
  Vlot, Marnix ; Houkes, Joep ; Lochs, Silke J.A. ; Swarts, Daan C. ; Zheng, Peiyuan ; Kunne, Tim ; Mohanraju, Prarthana ; Anders, Carolin ; Jinek, Martin ; Oost, John Van Der; Dickman, Mark J. ; Brouns, Stan J.J. (2018)
  Nucleic acids research 46 (2). - p. 873 - 885.

• Genome editing by natural and engineered CRISPR-associated nucleases
  Wu, Wen Y. ; Lebbink, Joyce H.G. ; Kanaar, Roland ; Geijsen, Niels ; Oost, John van der (2018)
  Nature Chemical Biology 14 (7). - p. 642 - 651.

• Shooting the messenger : RNA-targetting CRISPR-Cas systems
  Zhu, Yifan ; Klompe, Sanne E. ; Vlot, Marnix ; Oost, John van der; Staals, Raymond H.J. (2018)
  Bioscience Reports 38 (3).

2017

• Improving heterologous membrane protein production in Escherichia coli by combining transcriptional tuning and codon usage algorithms
  Claassens, Nico J. ; Siliakus, Melvin F. ; Spaans, Sebastiaan K. ; Creutzburg, Sjoerd C.A. ; Nijsse, Bart ; Schaap, Peter J. ; Quax, Tessa E.F. ; Oost, John Van Der (2017)
  PLoS ONE 12 (9).

• Biochemical characterization of the xylan hydrolysis profile of the extracellular endo-xylanase from Geobacillus thermodenitrificans T12
  Daas, Tijn ; Martínez, Patricia Murciano ; Weijer, Tom van de; Oost, John van der; Vos, Willem M. de; Kabel, Mirjam A. ; Kranenburg, Richard van (2017)
  BMC Biotechnology 17 (1).

• Ethyl acetate production by the elusive alcohol acetyltransferase from yeast
  Kruis, Alex ; Levisson, Mark ; Mars, Astrid E. ; Ploeg, Max van der; Garcés Daza, Fernando ; Ellena, Valeria ; Kengen, Servé W.M. ; Oost, John van der; Weusthuis, Ruud A. (2017)
  Metabolic Engineering 41 . - p. 92 - 101.

• Characterizing a thermostable Cas9 for bacterial genome editing and silencing
  Mougiakos, Ioannis ; Mohanraju, Prarthana ; Bosma, Elleke F. ; Vrouwe, Valentijn ; Finger Bou, Max ; Naduthodi, Mihris I.S. ; Gussak, Alex ; Brinkman, Rudolf B.L. ; Kranenburg, Richard Van; Oost, John Van Der (2017)
  Nature Communications 8 (1).

• Efficient Genome Editing of a Facultative Thermophile Using Mesophilic spCas9
  Mougiakos, Ioannis ; Bosma, Elleke F. ; Weenink, Koen ; Vossen, Eric ; Goijvaerts, Kirsten ; Oost, John van der; Kranenburg, Richard van (2017)
  ACS synthetic biology 6 (5). - p. 849 - 861.

• Streptococcus caviae sp. nov., isolated from Guinea pig faecal samples
  Palakawong Na Ayudthaya, Susakul ; Hilderink, Loes J. ; Oost, John van der; Vos, Willem M. de; Plugge, Caroline M. (2017)
  International Journal of Systematic and Evolutionary Microbiology 67 (5). - p. 1551 - 1556.

• A growth- and bioluminescence-based bioreporter for the in vivo detection of novel biocatalysts
  Rossum, Teunke van; Muras, A. ; Baur, Marco J.J. ; Creutzburg, Sjoerd C.A. ; Oost, John van der; Kengen, Servé W.M. (2017)
  Microbial Biotechnology 10 (3). - p. 625 - 641.

• Adaptations of archaeal and bacterial membranes to variations in temperature, pH and pressure
  Siliakus, Melvin F. ; Oost, John van der; Kengen, Servé W.M. (2017)
  Extremophiles 21 (4). - p. 651 - 670.

• Structural Basis for Guide RNA Processing and Seed-Dependent DNA Targeting by CRISPR-Cas12a
  Swarts, Daan C. ; Oost, John van der; Jinek, Martin (2017)
  Molecular Cell 66 (2). - p. 221 - 233.e4.

• Autonomous Generation and Loading of DNA Guides by Bacterial Argonaute
  Swarts, Daan C. ; Szczepaniak, Malwina ; Sheng, Gang ; Chandradoss, Stanley D. ; Zhu, Yifan ; Timmers, Elizabeth M. ; Zhang, Yong ; Zhao, Hongtu ; Lou, Jizhong ; Wang, Yanli ; Joo, Chirlmin ; Oost, John van der (2017)
  Molecular Cell 65 (6). - p. 985 - 998.

• FnCpf1: a novel and efficient genome editing tool for Saccharomyces cerevisiae
  Swiat, Michal A. ; Dashko, Sofia ; Ridder, Maxime den; Wijsman, Melanie ; Oost, John van der; Daran, Jean Marc ; Daran-Lapujade, Pascale (2017)
  Nucleic acids research 45 (21). - p. 12585 - 12598.

• Monascus ruber as cell factory for lactic acid production at low pH
  Weusthuis, Ruud A. ; Mars, Astrid E. ; Springer, Jan ; Wolbert, Emil J.H. ; Wal, Hetty van der; Vrije, Truus G. de; Levisson, Mark ; Leprince, Audrey ; Houweling-Tan, Bwee ; Moers, Antoine ; Hendriks, Sjon N.A. ; Mendes, Odette ; Griekspoor, Yvonne ; Werten, Marc W.T. ; Schaap, Peter J. ; Oost, John van der; Eggink, Gerrit (2017)
  Metabolic Engineering 42 . - p. 66 - 73.

• Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array
  Zetsche, Bernd ; Heidenreich, Matthias ; Mohanraju, Prarthana ; Fedorova, Iana ; Kneppers, Jeroen ; Degennaro, Ellen M. ; Winblad, Nerges ; Choudhury, Sourav R. ; Abudayyeh, Omar O. ; Wu, Wen Y. ; Oost, John van der (2017)
  Nature Biotechnology 35 (1). - p. 31 - 34.

2016

• Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216^T
  Bosma, Elleke F. ; Koehorst, Jasper J. ; Hijum, Sacha A.F.T. van; Renckens, Bernadet ; Vriesendorp, Bastienne ; Weijer, Tom van de; Schaap, Peter J. ; Vos, Willem M. de; Oost, John van der; Kranenburg, Richard van (2016)
  Standards in Genomic Sciences 11 . - 11 p.

• Harnessing the power of microbial autotrophy
  Claassens, Nico J. ; Machado de Sousa, Diana ; Martins dos Santos, Vitor ; Vos, Willem M. de; Oost, John van der (2016)
  Nature Reviews Microbiology 14 . - p. 692 - 706.

• Isolation of a genetically accessible thermophilic xylan degrading bacterium from compost
  Daas, Tijn ; Weijer, Tom van de; Vos, Willem M. de; Oost, John van der; Kranenburg, Richard van (2016)
  Biotechnology for Biofuels 9 .

• Healthy human gut phageome
  Manrique, Pilar ; Bolduc, Benjamin ; Walk, Seth T. ; Oost, John van der; Vos, Willem M. de; Young, Mark J. (2016)
  Proceedings of the National Academy of Sciences of the United States of America 113 (37). - p. 10400 - 10405.

• Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems
  Mohanraju, Prarthana ; Makarova, Kira S. ; Zetsche, Bernd ; Zhang, Feng ; Koonin, Eugene V. ; Oost, John van der (2016)
  Science 353 (6299). - 14 p.

• Next Generation Prokaryotic Engineering : The CRISPR-Cas Toolkit
  Mougiakos, Ioannis ; Bosma, Elleke F. ; Vos, Willem M. de; Kranenburg, Richard van; Oost, John van der (2016)
  Trends in Biotechnology 34 (7). - p. 575 - 587.

• CRISPR-Cas9 gene editing : Delivery aspects and therapeutic potential
  Oude Blenke, Erik ; Evers, Martijn J.W. ; Mastrobattista, Enrico ; Oost, John van der (2016)
  Journal of Controlled Release 244 . - p. 139 - 148.

• Structural and biochemical characterisation of Archaeoglobus fulgidus esterase reveals a bound CoA molecule in the vicinity of the active site
  Sayer, Christopher ; Finnigan, William ; Isupov, Michail N. ; Levisson, Mark ; Kengen, Servé W.M. ; Oost, John van der; Harmer, Nicholas J. ; Littlechild, Jennifer A. (2016)
  Scientific Reports 6 .

• Integrated in silico analysis of pathway designs for synthetic photo-electro-autotrophy
  Volpers, Michael ; Claassens, Nico J. ; Noor, Elad ; Oost, John van der; Vos, Willem M. de; Kengen, Servé W.M. ; Martins dos Santos, Vitor (2016)
  PLoS ONE 11 (6).

2015

• Bacteriophage exclusion, a new defense system
  Barrangou, R. ; Oost, J. van der (2015)
  The EMBO Journal 34 (2). - p. 134 - 135.

• Establishment of markerless gene deletion tools in thermophilic Bacillus smithii and construction of multiple mutant strains
  Bosma, E.F. ; Weijer, A.H.P. van de; Vlist, L. ; Vos, W.M. de; Oost, J. van der; Kranenburg, R. van (2015)
  Microbial Cell Factories 14 . - 12 p.

• Isolation and Screening of Thermophilic Bacilli from Compost for Electrotransformation and Fermentation: Characterization of Bacillus smithii ET 138 as a New Biocatalyst
  Bosma, E.F. ; Weijer, A.H.P. van de; Daas, M.J.A. ; Oost, J. van der; Vos, W.M. de; Kranenburg, R. van (2015)
  Applied and Environmental Microbiology 81 (5). - p. 1874 - 1883.

• Formation of the ether lipids archaetidylglycerol and archaetidylethanolamine in Escherichia coli
  Caforio, Antonella ; Jain, Samta ; Fodran, Peter ; Siliakus, Melvin ; Minnaard, Adriaan J. ; Oost, John Van Der; Driessen, Arnold J.M. (2015)
  Biochemical Journal 470 (3). - p. 343 - 355.

• Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity
  Charpentier, Emmanuelle ; Richter, Hagen ; Oost, John van der; White, Malcolm F. (2015)
  FEMS Microbiology Reviews 39 (3). - p. 428 - 441.

• Genomic, proteomic and biochemical analysis of the organohalide respiratory pathway in Desulfitobacterium dehalogenans
  Kruse, T. ; Pas, B.A. van de; Atteia, A. ; Krab, K. ; Hagen, W.R. ; Goodwin, L. ; Chain, P. ; Boeren, S. ; Maphosa, F. ; Schraa, G. ; Vos, W.M. de; Oost, J. van der; Smidt, H. ; Stams, A.J.M. (2015)
  Journal of Bacteriology 197 (5). - p. 893 - 904.

• An updated evolutionary classification of CRISPR-Cas systems
  Makarova, K.S. ; Wolf, Y.I. ; Alkhnbashi, O.S. ; Brouns, S.J.J. ; Oost, John Van Der (2015)
  Nature Reviews Microbiology 13 (11). - p. 722 - 736.

• CRISPR sabotage
  Oost, John van der; Brouns, S.J.J. (2015)
  Genome Biology 16 (1).

• Beat their swords into ploughshares
  Oost, John van der (2015)
  Microbial Biotechnology 8 (1). - p. 34 - 35.

• Codon Bias as a Means to Fine-Tune Gene Expression
  Quax, T.E.F. ; Claassens, N.J.H.P. ; Söll, D. ; Oost, J. van der (2015)
  Molecular Cell 59 (2). - p. 149 - 161.

• Analysis of protein-RNA interactions in CRISPR proteins and effector complexes by UV-induced cross-linking and mass spectrometry
  Sharma, Kundan ; Hrle, Ajla ; Kramer, Katharina ; Sachsenberg, Timo ; Staals, Raymond H.J. ; Randau, Lennart ; Marchfelder, Anita ; Oost, John van der; Kohlbacher, Oliver ; Conti, Elena ; Urlaub, Henning (2015)
  Methods : a companion to Methods in enzymology 89 . - p. 138 - 148.

• NADPH-generating systems in bacteria and archaea
  Spaans, S.K. ; Weusthuis, R.A. ; Oost, J. van der; Kengen, S.W.M. (2015)
  Frontiers in Microbiology 6 . - 47 p.

• The chromosome copy number of the hyperthermophilic archaeon Thermococcus kodakarensis KOD1
  Spaans, S.K. ; Oost, J. van der; Kengen, S.W.M. (2015)
  Extremophiles 19 (4). - p. 741 - 750.

• Argonaute of the archaeon Pyrococcus furiosus is a DNA-guided nuclease that targets cognate DNA
  Swarts, D.C. ; Hegge, J.W. ; Hinojo, Ismael ; Shiimori, Masami ; Ellis, Michael A. ; Dumrongkulraksa, Justin ; Terns, Rebecca M. ; Terns, Michael P. ; Oost, John Van Der (2015)
  Nucleic acids research 43 (10). - p. 5120 - 5129.

• Effects of Argonaute on Gene Expression in Thermus thermophilus
  Swarts, D.C. ; Koehorst, J.J. ; Westra, E.R. ; Schaap, P.J. ; Oost, J. van der (2015)
  PLoS ONE 10 (4). - 13 p.

• Structural biology. Structures of the CRISPR-Cmr complex reveal mode of RNA target positioning
  Taylor, D.W. ; Zhu, Y. ; Staals, R.H.J. ; Kornfeld, J.E. ; Shinkai, A. ; Oost, J. van der; Nogales, E. ; Doudna, J.A. (2015)
  Science 348 (6234). - p. 581 - 585.

• Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
  Zetsche, Bernd ; Gootenberg, Jonathan S. ; Abudayyeh, Omar O. ; Slaymaker, Ian M. ; Makarova, Kira S. ; Essletzbichler, Patrick ; Volz, Sara E. ; Joung, Julia ; Oost, John van der; Regev, Aviv ; Koonin, Eugene V. ; Zhang, Feng (2015)
  Cell 163 (3). - p. 759 - 771.

2014

• Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain
  Blombach, F. ; Launay, H. ; Snijders, A.P. ; Zorraquino, V. ; Wu, H. ; Koning, B. de; Brouns, S.J.J. ; Ettema, T.J. ; Camilloni, C. ; Cavalli, A. ; Vendruscolo, M. ; Dickman, M.J. ; Cabrita, L.D. ; Teana, A. La; Benelli, D. ; Londei, P. ; Christodoulou, J. ; Oost, J. van der (2014)
  Biochemical Journal 462 (2). - p. 373 - 384.

• DHAP-dependent aldolases from (hyper)thermophiles: biochemistry and applications
  Falcicchio, P. ; Wolterink-van Loo, S. ; Franssen, M.C.R. ; Oost, J. van der (2014)
  Extremophiles 18 (1). - p. 1 - 13.

• Molecular insights into DNA interference by CRISPR-associated nuclease-helicase Cas3
  Gong, B. ; Shin, M. ; Sun, J. ; Jung, C.H. ; Bolt, E.L. ; Oost, J. van der; Kim, J.S. (2014)
  Proceedings of the National Academy of Sciences of the United States of America 111 (46). - p. 16359 - 16364.

• Crystal structure of the CRISPR RNA–guided surveillance complex from Escherichia coli
  Jackson, R.N. ; Golden, S.M. ; Erp, P.B. ; Carter, J. ; Westra, E.R. ; Brouns, S.J.J. ; Oost, J. van der; Terwilliger, T.C. ; Read, R.J. ; Wiedenheft, B. (2014)
  Science 345 (6203). - p. 1473 - 1479.

• Phage Display of Engineered Binding Proteins
  Levisson, M. ; Spruijt, R.B. ; Winkel, I.N. ; Kengen, S.W.M. ; Oost, J. van der (2014)
  Methods in molecular biology 1129 . - p. 211 - 229.

• The Role of CRISPR-Cas Systems in Virulence of Pathogenic Bacteria
  Louwen, R. ; Staals, R.H.J. ; Endtz, H.P. ; Baarlen, P. van; Oost, J. van der (2014)
  Microbiology and Molecular Biology Reviews 78 (1). - p. 74 - 88.

• Biocatalytic asymmetric phosphorylation of mevalonate
  Matsumi, R. ; Hellriegel, C. ; Schoenenberger, B. ; Milesi, T. ; Oost, J. van der; Wohlgemuth, R. (2014)
  RSC Advances : An international journal to further the chemical sciences 4 (25). - p. 12989 - 12994.

• Prokaryotic Argonautes – variations on the RNA interference theme
  Oost, J. van der; Swarts, D.C. ; Jore, M.M. (2014)
  Microbial Cell 1 (5). - p. 158 - 159.

• Unravelling the structural and mechanistic basis of CRISPR-Cas systems
  Oost, J. van der; Westra, E.R. ; Jackson, R.N. ; Wiedenheft, B. (2014)
  Nature Reviews Microbiology 12 (7). - p. 479 - 492.

• Molecular Characterization of an NADPH-Dependent Acetoin Reductase/2,3-Butanediol Dehydrogenase from Clostridium beijerinckii NCIMB 8052
  Raedts, J.G.J. ; Siemerink, M.A.J. ; Levisson, M. ; Oost, J. van der; Kengen, S.W.M. (2014)
  Applied and Environmental Microbiology 80 (6). - p. 2011 - 2020.

• Substrate Specificity and Stereoselectivity of Two Sulfolobus 2-Keto-3-deoxygluconate Aldolases towards Azido-Substituted Aldehydes
  Schurink, M. ; Wolterink-van Loo, S. ; Oost, J. van der; Sonke, Th. ; Franssen, M.C.R. (2014)
  ChemCatChem 6 (4). - p. 1073 - 1081.

• Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage
  Sheng, G. ; Zhao, H. ; Wang, J. ; Rao, Y. ; Tian, W. ; Swarts, D.C. ; Oost, J. van der; Patel, D.J. ; Wang, Y. (2014)
  Proceedings of the National Academy of Sciences of the United States of America 111 (2). - p. 652 - 657.

• RNA Targeting by the Type III-A CRISPR-Cas Csm Complex of Thermus thermophilus
  Staals, R.H.J. ; Zhu, Y. ; Taylor, D.W. ; Kornfeld, J.E. ; Sharma, K. ; Barendregt, A. ; Koehorst, J.J. ; Vlot, M. ; Neupane, N. ; Varossieau, K. ; Sakamoto, K. ; Suzuki, T. ; Schaap, P.J. ; Urlaub, H. ; Heck, A.J.R. ; Nogales, E. ; Doudna, J.A. ; Shinkai, A. ; Oost, J. van der (2014)
  Molecular Cell 56 (4). - p. 518 - 530.

• The evolutionary journey of Argonaute proteins
  Swarts, D.C. ; Makarova, K. ; Wang, Y. ; Nakanishi, K. ; Ketting, R.F. ; Koonin, E.V. ; Patel, D.J. ; Oost, J. van der (2014)
  Nature Structural and Molecular Biology 21 (9). - p. 743 - 753.

• DNA-guided DNA interference by a prokaryotic Argonaute
  Swarts, D.C. ; Jore, M.M. ; Westra, E.R. ; Zhu, Y. ; Janssen, J.H. ; Snijders, A.P. ; Wang, Y. ; Patel, D.J. ; Berenguer, J. ; Brouns, S.J.J. ; Oost, J. van der (2014)
  Nature 507 (7491). - p. 258 - 261.

2013

• Biohydrogen Production by the Thermophilic Bacterium Caldicellulosiruptor saccharolyticus: Current Status and Perspectives
  Bielen, A.A.M. ; Verhaart, M.R.A. ; Oost, J. van der; Kengen, S.W.M. (2013)
  Life 3 (1). - p. 52 - 85.

• A thermophile under pressure: Transcriptional analysis of the response of Caldicellulosiruptor saccharolyticus to different H2 partial pressures
  Bielen, A.A.M. ; Verhaart, M.R.A. ; Vanfossen, A.L. ; Blumer-Schuette, S.E. ; Stams, A.J.M. ; Oost, J. van der; Kelly, R.M. ; Kengen, S.W.M. (2013)
  International Journal of Hydrogen Energy 38 (4). - p. 1837 - 1849.

• Sustainable Production of Bio-Based Chemicals by Extremophiles
  Bosma, E.F. ; Oost, J. van der; Vos, W.M. de; Kranenburg, R. van (2013)
  Current Biotechnology 2 (4).

• Potential of proton-pumping rhodopsins: engineering photosystems into microorganisms
  Claassens, N.J.H.P. ; Volpers, M. ; Martins Dos Santos, V.A.P. ; Oost, J. van der; Vos, W.M. de (2013)
  Trends in Biotechnology 31 (11). - p. 633 - 642.

• A novel link between Campylobacter jejuni bacteriophage defence, virulence and Guillain-Barré syndrome
  Louwen, R. ; Horst-Kreft, D. ; Boer, A.G. de; Graaf, L. van der; Knegt, G. de; Hamersma, M. ; Heikema, A.P. ; Timms, A.R. ; Jacobs, B.C. ; Wagenaar, J.A. ; Endtz, H.P. ; Oost, J. van der; Wells, J. ; Nieuwenhuis, E.E.S. ; Vliet, A.H. van; Willemsen, P.T.J. ; Baarlen, P. van; Belkum, A. van (2013)
  European Journal of Clinical Microbiology and Infectious Diseases 32 (2). - p. 207 - 226.

• Molecular biology - New tool for genome surgery
  Oost, J. van der (2013)
  Science 339 (6121). - p. 768 - 770.

• Differential translation tunes uneven production of operon-encoded proteins
  Quax, T.E.F. ; Wolf, Y.I. ; Koehorst, J.J. ; Wurtzel, O. ; Oost, R. van der; Ran, W. ; Blombach, F. ; Makarova, K.S. ; Brouns, S.J.J. ; Forster, A.C. ; Wagner, E.G.H. ; Sorek, R. ; Koonin, E.V. ; Oost, J. van der (2013)
  Cell Reports 4 (5). - p. 938 - 944.

• Massive activation of archaeal defense genes during viral infection
  Quax, T.E.F. ; Voet, M. ; Sismeiro, O. ; Dillies, M.A. ; Jagla, B. ; Coppée, J.Y. ; Sezonov, G. ; Forterre, P. ; Oost, J. van der; Lavigne, R. ; Prangishvili, D. (2013)
  Journal of Virology 87 (15). - p. 8419 - 8428.

• A novel bacterial enzyme with D-glucuronyl C5-epimerase activity
  Raedts, J.G.J. ; Lundgren, M. ; Kengen, S.W.M. ; Li, J.P. ; Oost, J. van der (2013)
  Journal of Biological Chemistry 288 (34). - p. 24332 - 24339.

• Reporter-based screening and selection of enzymes
  Rossum, T. van; Kengen, S.W.M. ; Oost, J. van der (2013)
  FEBS Journal 280 (13). - p. 2979 - 2996.

• A capture approach for supercoiled plasmid DNA using a triplex-forming oligonucleotide
  Ruigrok, V.J.B. ; Westra, E.R. ; Brouns, S.J.J. ; Escudé, C. ; Smidt, H. ; Oost, J. van der (2013)
  Nucleic acids research 41 (10).

• Structure and Activity of the RNA-Targeting Type III-B CRISPR-Cas Complex of Thermus thermophilus
  Staals, R.H.J. ; Agari, Y. ; Maki-Yonekura, S. ; Zhu, Y. ; Taylor, D.W. ; Duijn, E. van; Barendregt, A. ; Vlot, M. ; Koehorst, J.J. ; Sakamoto, K. ; Masuda, A. ; Dohmae, N. ; Schaap, P.J. ; Doudna, J.A. ; Heck, A. ; Yonekura, K. ; Oost, J. van der; Shinkai, A. (2013)
  Molecular Cell 52 (1). - p. 135 - 145.

2012

• Native tandem and ion mobility mass spectrometry highlight structural and modular similarities in CRISPR-associated protein complexes from Escherichia coli and Pseudomonas aeruginosa
  Duijn, E. van; Barbu, I.M. ; Barendregt, A. ; Jore, M.M. ; Wiedenheft, B. ; Lundgren, M. ; Westra, E.R. ; Brouns, S.J.J. ; Doudna, J.A. ; Oost, J. van der; Heck, A.J.R. (2012)
  Molecular and Cellular Proteomics 11 . - p. 1430 - 1441.

• RNA in defense: CRISPRs protect prokaryotes against mobile genetic elements
  Jore, M.M. ; Brouns, S.J.J. ; Oost, J. van der (2012)
  Cold Spring Harbor Perspectives in Biology 4 (6).

• Functional and structural characterization of a thermostable acetyl esterase from Thermotoga maritima
  Levisson, M. ; Han, G.W. ; Deller, M.C. ; Hendriks, S.N.A. ; Oost, J. van der; Kengen, S.W.M. (2012)
  Proteins : Structure, Function, and Bioinformatics 80 (6). - p. 1545 - 1559.

• Thermal Stabilization of an Endoglucanase by Cyclization
  Lieshout, J.F.T. van; Gutierrez, O. ; Vroom, W. ; Planas, A. ; Vos, W.M. de; Oost, J. van der; Koutsopoulos, S. (2012)
  Applied Biochemistry and Biotechnology 167 (7). - p. 2039 - 2053.

• Virus-like particle nanoreactors: programmed en capsulation of the thermostable CelB glycosidase inside the P22 capsid
  Patterson, D.P. ; Schwarz, B. ; El-Boubbou, K. ; Oost, J. van der; Prevelige, P.E. ; Douglas, T. (2012)
  Soft Matter 8 (39). - p. 10158 - 10166.

• Characterization of Aptamer-Protein Complexes by X-ray Crystallography and Alternative Approaches
  Ruigrok, V.J.B. ; Levisson, M. ; Hekelaar, J. ; Smidt, H. ; Dijkstra, B.W. ; Oost, J. van der (2012)
  International Journal of Molecular Sciences 13 (8). - p. 10537 - 10552.

• Kinetic and Stoichiometric Characterisation of Streptavidin-Binding Aptamers
  Ruigrok, V.J.B. ; Duijn, E. van; Barendregt, A. ; Dyer, K. ; Tainer, J.A. ; Stoltenburg, R. ; Strehlitz, B. ; Levisson, M. ; Smidt, H. ; Oost, J. van der (2012)
  ChemBioChem 13 (6). - p. 829 - 836.

• The CRISPRs, They Are A-Changin': How Prokaryotes Generate Adaptive Immunity
  Westra, E.R. ; Swarts, D.C. ; Staals, R.H.J. ; Jore, M.M. ; Brouns, S.J.J. ; Oost, J. van der (2012)
  Annual Review of Genetics 46 . - p. 311 - 339.

• Cascade-mediated binding and bending of negatively supercoiled DNA
  Westra, E.R. ; Nilges, B. ; Erp, P.B. ; Oost, J. van der; Dame, R.T. ; Brouns, S.J.J. (2012)
  RNA Biology 9 (9). - p. 1134 - 1138.

• CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
  Westra, E.R. ; Erp, P.B.G. ; Künne, T. ; Wong, S.P. ; Staals, R.H.J. ; Seegers, C.L.C. ; Bollen, S. ; Jore, M.M. ; Semenova, E. ; Severinov, K. ; Vos, W.M. de; Dame, R.T. ; Vries, R. de; Brouns, S.J.J. ; Oost, J. van der (2012)
  Molecular Cell 46 (5). - p. 595 - 605.

2011

• Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes
  Al-Attar, S. ; Westra, E.R. ; Oost, J. van der; Brouns, S.J.J. (2011)
  Biological Chemistry 392 (4). - p. 277 - 289.

• Synthesis of non-natural carbohydrates from glycerol and aldehydes in a one-pot four-enzyme cascade reaction
  Babich, L. ; Hartog, L. ; Falcicchio, P. ; Oost, J. van der (2011)
  Green Chemistry 13 (10). - p. 2895 - 2900.

• An HflX-type GTPase from Sulfolobus solfataricus binds to the 50S ribosomal subunit in all nucleotide-bound states
  Blombach, F. ; Swarts, D.C. ; Oost, J. van der (2011)
  Journal of Bacteriology 193 (11). - p. 2861 - 2867.

• Assembling the archaeal ribosome: roles for translation-factor-related GTPases
  Blombach, F. ; Brouns, S.J.J. ; Oost, J. van der (2011)
  Biochemical Society Transactions 39 (1). - p. 45 - 50.

• Growth phase-dependent gene regulation in vivo in Sulfolobus solfataricus
  DeYoung, M. ; Oost, J. van der (2011)
  FEMS Microbiology Letters 321 (2). - p. 92 - 99.

• Functional curation of the Sulfolobus solfataricus P2 and S. acidocaldarius 98-3 complete genome sequences
  Esser, D. ; Kouril, T. ; Zaparty, M. ; Sierocinski, P. ; Oost, J. van der; Makarova, K.S. ; Siebers, B. (2011)
  Extremophiles 15 (6). - p. 711 - 712.

• Structural basis for CRISPR RNA-guided DNA recognition by Cascade
  Jore, M.M. ; Lundgren, N.M.J. ; Duijn, E. van; Bultema, J.B. ; Westra, E.R. ; Oost, J. van der; Brouns, S.J.J. ; Beijer, M.R. (2011)
  Nature Structural and Molecular Biology 18 (5). - p. 529 - 536.

• Evolution and classification of the CRISPR-Cas systems
  Makarova, K.S. ; Brouns, S.J.J. ; Oost, J. van der (2011)
  Nature Reviews Microbiology 9 (6). - p. 467 - 477.

• Isoprenoid biosynthesis in Archaea - Biochemical and evolutionary implications
  Matsumi, R. ; Atomi, H. ; Driessen, A.J.M. ; Oost, J. van der (2011)
  Research in Microbiology 162 (1). - p. 39 - 52.

• Occurrence of L-iduronic acid and putative D-glucuronyl C5-epimerases in prokaryotes
  Raedts, J.G.J. ; Kengen, S.W.M. ; Oost, J. van der (2011)
  Glycoconjugate Journal 28 (2). - p. 57 - 66.

• Alternative affinity tools: more attractive than antibodies?
  Ruigrok, V.J.B. ; Levisson, M. ; Eppink, M.H.M. ; Smidt, H. ; Oost, J. van der (2011)
  Biochemical Journal 436 (1). - p. 1 - 13.

• Initial mutations direct alternative pathways of protein evolution
  Salverda, M.L.M. ; Dellus, E. ; Gorter, F.A. ; Debets, A.J.M. ; Oost, J. van der; Hoekstra, R.F. ; Tawfik, D.S. ; Visser, J.A.G.M. de (2011)
  Plos Genetics 7 (3). - 11 p.

• Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
  Semenova, E.V. ; Jore, M.M. ; Westra, E.R. ; Oost, J. van der; Brouns, S.J.J. (2011)
  Proceedings of the National Academy of Sciences of the United States of America 108 (25). - p. 10098 - 10103.

• D-2,3-Butanediol Production Due to Heterologous Expression of an Acetoin Reductase in Clostridium acetobutylicum
  Siemerink, M.A.J. ; Kuit, W. ; Lopez Contreras, A.M. ; Eggink, G. ; Oost, J. van der; Kengen, S.W.M. (2011)
  Applied and Environmental Microbiology 77 (8). - p. 2582 - 2588.

• Microbial production of bulk chemicals: development of anaerobic processes
  Weusthuis, R.A. ; Lamot, I. ; Oost, J. van der; Sanders, J.P.M. (2011)
  Trends in Biotechnology 29 (4). - p. 153 - 158.

• Structures of the RNA-guided surveillance complex from a bacterial immune system
  Wiedenheft, B. ; Jore, M.M. ; Brouns, S.J.J. ; Oost, J. van der (2011)
  Nature 477 . - p. 486 - 489.

2010

• Identification of modules in Aspergillus niger by gene co-expression network analysis
  Berg, R.A. van den; Braaksma, M. ; Veen, D. van der; Werf, M.J. van der; Punt, P.J. ; Oost, J. van der; Graaff, L.H. de (2010)
  Fungal Genetics and Biology 47 (6). - p. 539 - 550.

• Pyrophosphate as a central energy carrier in the hydrogen-producing extremely thermophilic Caldicellulosiruptor saccharolyticus
  Bielen, A.A.M. ; Willquist, K. ; Engman, J. ; Oost, J. van der; Niel, E.W.J. van; Kengen, S.W.M. (2010)
  FEMS Microbiology Letters 307 (1). - p. 48 - 54.

• Functional study on GTP hydrolysis by the GTP-binding protein from Sulfolobus solfataricus, a member of the HflX family
  Huang, B. ; Wu, H. ; Hao, N. ; Blombach, F. ; Oost, J. van der; Li, X. ; Zhang, X.C. ; Rao, Z. (2010)
  Journal of Biochemistry 148 (1). - p. 103 - 113.

• NMR characterization of a 264-residue hyperthermostable endo-ß-1,3-glucanase
  Ippel, J.H. ; Koutsopoulos, S. ; Nabuurs, S.M. ; Berkel, W.J.H. van; Oost, J. van der; Mierlo, C.P.M. van (2010)
  Biochemical and Biophysical Research Communications 391 (1). - p. 370 - 375.

• Molecular characterization of the glucose isomerase from the thermophilic bacterium Fervidobacterium gondwanense
  Kluskens, L.D. ; Zeilstra, J.B. ; Geerling, A.C.M. ; Vos, W.M. de; Oost, J. van der (2010)
  Environmental Technology 31 (10). - p. 1083 - 1090.

• Fidelity in Archaeal Information Processing
  Koning, B. de; Blombach, F. ; Brouns, S.J.J. ; Oost, J. van der (2010)
  Archaea : an international microbiological journal 2010 .

• Quantitative Proteomic Analysis of Sulfolobus solfataricus Membrane Proteins
  Pham, T.K. ; Sierocinski, P. ; Oost, J. van der; Wright, P.C. (2010)
  Journal of Proteome Research 9 (2). - p. 1165 - 1172.

• Hydrogen production by hyperthermophilic and extremely thermophilic bacteria and archaea: mechanisms for reductant disposal
  Verhaart, M.R.A. ; Bielen, A.A.M. ; Oost, J. van der; Stams, A.J.M. ; Kengen, S.W.M. (2010)
  Environmental Technology 31 (8&9). - p. 993 - 1003.

• Hot Transcriptomics
  Walther, J. ; Sierocinski, P. ; Oost, J. van der (2010)
  Archaea : an international microbiological journal 2010 . - 14 p.

• H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO
  Westra, E.R. ; Pul, Ü. ; Heidrich, N. ; Jore, M.M. ; Lundgren, N.M.J. ; Stratmann, T. ; Wurm, R. ; Raine, A. ; Mescher, M. ; Heereveld, L. van; Mastop, M. ; Wagner, E.G.H. ; Schnetz, K. ; Oost, J. van der; Wagner, R. ; Brouns, S.J.J. (2010)
  Molecular Microbiology 77 (6). - p. 1380 - 1393.

• Structure of the ribosome associating GTPase HflX
  Wu, H. ; Sun, L. ; Blombach, F. ; Brouns, S.J.J. ; Snijders, A.P.L. ; Lorenzen, K. ; Heuvel, R.H.H. van den; Heck, A.J.R. ; Fu, S. ; Li, X. ; Zhang, X.C. ; Rao, Z. ; Oost, J. van der (2010)
  Proteins : Structure, Function, and Bioinformatics 78 (3). - p. 705 - 713.

• "Hot standards" for the thermoacidophilic archaeon Sulfolobus solfataricus
  Zaparty, M. ; Esser, D. ; Gertig, S. ; Haferkamp, P. ; Kouril, T. ; Sierocinski, P. ; Pham, T.K. ; Manica, A. ; Reimann, J. ; Schreiber, K. ; Teichmann, D. ; Wolferen, M.E. van; Jan, M. von; Wieloch, P. ; Albers, S.V. ; Driessen, A.J.M. ; Klenk, H.P. ; Schleper, C. ; Schomburg, D. ; Oost, J. van der; Wright, P.C. ; Siebers, B. (2010)
  Extremophiles 14 (1). - p. 119 - 142.

2009

• SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation
  Albers, S.V. ; Birkeland, N.K. ; Driessen, A.J.M. ; Gertig, S. ; Haferkamp, P. ; Klenk, H.P. ; Kouril, T. ; Manica, A. ; Pham, T.K. ; Ruoff, P. ; Schleper, C. ; Schomburg, D. ; Sharkey, K. ; Siebers, B. ; Sierocinski, P. ; Steur, R. ; Oost, J. van der; Westerhoff, H.V. ; Wieloch, P. ; Wright, P.C. ; Zaparty, M. (2009)
  Biochemical Society Transactions 37 (1). - p. 58 - 64.

• Identification of an ortholog of the eukaryotic RNA polymerase III subunit RPC34 in Crenarchaeota and Thaumarchaeota suggests specialization of RNA polymerases for coding and non-coding RNAs in Archaea
  Blombach, F. ; Makarova, K.S. ; Marrero, J. ; Siebers, B. ; Koonin, E.V. ; Oost, J. van der (2009)
  Biology Direct 4 . - p. 39 - 39.

• Crystal structure of a family 16 endoglucanase from the hyperthermophile Pyrococcus furiosus--structural basis of substrate recognition
  Ilari, A. ; Fiorillo, A. ; Angelaccio, S. ; Florio, R. ; Chiaraluce, R. ; Oost, J. van der; Consalvi, V. (2009)
  FEBS Journal 276 (4). - p. 1048 - 1058.

• Role of multiprotein bridging factor 1 in archaea: bridging the domains?
  Koning, B. de; Blombach, F. ; Wu Hao, ; Brouns, S.J.J. ; Oost, J. van der (2009)
  Biochemical Society Transactions 37 (1). - p. 52 - 57.

• Correlated mutation analyses on super-family alignments reveal functionally important residues
  Kuipers, R.K. ; Joosten, H.J. ; Verwiel, E. ; Paans, J. ; Akerboom, J. ; Oost, J. van der; Leferink, N.G.H. ; Berkel, W.J.H. van; Vriend, G. ; Schaap, P.J. (2009)
  Proteins : Structure, Function, and Bioinformatics 76 (3). - p. 608 - 616.

• Carboxylic ester hydrolases from hyperthermophiles
  Levisson, M. ; Oost, J. van der; Kengen, S.W.M. (2009)
  Extremophiles 13 (4). - p. 567 - 581.

• Crystal structure and biochemical properties of a novel thermostable esterase containing an immunoglobulin-like domain
  Levisson, M. ; Sun, L. ; Hendriks, S.N.A. ; Swinkels, P. ; Akveld, T. ; Bultema, J.B. ; Barendregt, A. ; Heuvel, R.H.H. van den; Dijkstra, B.W. ; Oost, J. van der; Kengen, S.W.M. (2009)
  Journal of Molecular Biology 385 (3). - p. 949 - 962.

• Cofactor engineering of Lactobacillus brevis alcohol dehydrogenase by computational design
  Machielsen, M.P. ; Looger, L.L. ; Raedts, J.G.J. ; Dijkhuizen, S. ; Hummel, W. ; Henneman, H.G. ; Daussmann, T. ; Oost, J. van der (2009)
  Engineering in Life Sciences 9 (1). - p. 38 - 44.

• Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements
  Makarova, K.S. ; Wolf, Y.I. ; Oost, J. van der; Koonin, E.V. (2009)
  Biology Direct 4 . - p. 29 - 29.

• RNAi: prokaryotes get in on the act
  Oost, J. van der; Brouns, S.J.J. (2009)
  Cell 139 (5). - p. 863 - 865.

• CRISPR-based adaptive and heritable immunity in prokaryotes
  Oost, J. van der; Jore, M.M. ; Westra, E.R. ; Lundgren, N.M.J. ; Brouns, S.J.J. (2009)
  Trends in Biochemical Sciences 34 (8). - p. 401 - 407.

• The crystal structure of a hyperthermoactive exopolygalacturonase from Thermotoga maritima reveals a unique tetramer
  Pijning, T. ; Pouderoyen, G. van; Kluskens, L.D. ; Oost, J. van der; Dijkstra, B.W. (2009)
  FEBS Letters 583 (22). - p. 3665 - 3670.

• Effect of O2 concentrations on Sulfolobus solfataricus P2
  Simon, G. ; Walther, J. ; Zabeti, N. ; Combet-Blanc, Y. ; Auria, R. ; Oost, J. van der; Casalot, L. (2009)
  FEMS Microbiology Letters 299 (2). - p. 255 - 260.

• Improving low-temperature activity of Sulfolobus acidocaldarius 2-keto-3-deoxygluconate aldolase
  Wolterink-van Loo, S. ; Siemerink, M.A.J. ; Perrakis, G. ; Kaper, T. ; Kengen, S.W.M. ; Oost, J. van der (2009)
  Archaea : an international microbiological journal 2 (4). - p. 233 - 239.

2008

• Small CRISPR RNAs guide antiviral defense in prokaryotes
  Brouns, S.J.J. ; Jore, M.M. ; Lundgren, M. ; Westra, E.R. ; Slijkhuis, R.J. ; Snijders, A.P. ; Dickman, M.J. ; Makarova, K.S. ; Koonin, E.V. ; Oost, J. van der (2008)
  Science 321 (5891). - p. 960 - 964.

• Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily
  Brouns, S.J.J. ; Barends, T.R.M. ; Worm, P. ; Akerboom, J. ; Turnbull, A.P. ; Salmon, L. ; Oost, J. van der (2008)
  Journal of Molecular Biology 379 (2). - p. 357 - 371.

• The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN) of Sulfolobus solfataricus: a key-enzyme of the semi-phosphorylative branch of the Entner-Doudoroff pathway
  Ettema, T.J.G. ; Ahmed, H. ; Geerling, A.C.M. ; Oost, J. van der; Siebers, B. (2008)
  Extremophiles 12 (1). - p. 75 - 88.

• Divergent roles of CprK paralogues from Desulfitobacterium hafniense in activating gene expression
  Gabor, K. ; Sene, K.H. ; Smidt, H. ; Vos, W.M. de; Oost, J. van der (2008)
  Microbiology 154 . - p. 3686 - 3696.

• Molecular basis of halorespiration control by CprK, a CRP-FNR type transcriptional regulator
  Levy, C. ; Pike, K. ; Heyes, D. ; Joyce, M.G. ; Gabor, K. ; Smidt, H. ; Oost, J. van der; Leys, D. (2008)
  Molecular Microbiology 70 (1). - p. 151 - 167.

• Laboratory evolution of Pyrococcus furiosus alcohol dehydrogenase to improve the production of (2S,5S)-hexanediol at moderate temperatures
  Machielsen, M.P. ; Leferink, N.G.H. ; Hendriks, A. ; Brouns, S.J.J. ; Hennemann, H. ; Daussmann, T. ; Oost, J. van der (2008)
  Extremophiles 12 (4). - p. 587 - 594.

• Transcriptome analysis of infection of the archaeon Sulfolobus solfataricus with Sulfolobus turreted icosahedral virus
  Ortmann, A.C. ; Walther, J. ; Brumfield, S.K. ; McInnerney, K. ; Brouns, S.J.J. ; Werken, H.J.G. van de; Bothner, B. ; Douglas, T. ; Oost, J. van der; Young, M.J. (2008)
  Journal of Virology 82 (10). - p. 4874 - 4883.

• Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus
  Werken, H.J.G. van de; Verhaart, M.R.A. ; Vanfossen, A.L. ; Willquist, K. ; Lewis, D.L. ; Nichols, J.D. ; Goorissen, H.P. ; Mongodin, E.F. ; Nelson, K.E. ; Niel, E.W.J. van; Stams, A.J.M. ; Ward, D.E. ; Vos, W.M. de; Oost, J. van der; Kelly, R.M. ; Kengen, S.W.M. (2008)
  Applied and Environmental Microbiology 74 (21). - p. 6720 - 6729.

• Characterization of a thermostable dihydrodipicolinate synthase from Thermoanaerobacter tengcongensis
  Wolterink-van Loo, S. ; Levisson, M. ; Cabrières, M.C. ; Franssen, M.C.R. ; Oost, J. van der (2008)
  Extremophiles 12 (3). - p. 461 - 469.

2007

• Crystal structure and biochemical properties of the D-arabinose dehydrogenase from Sulfolobus solfataricus
  Brouns, S.J.J. ; Turnbull, A.P. ; Willemen, H.L.D.M. ; Akerboom, A.P. ; Oost, J. van der (2007)
  Journal of Molecular Biology 371 (5). - p. 1249 - 1260.

• Tertiary structure in 7.9 M guanidinium chloride: the role of Glu-53 and Asp-287 in Pyrococcus furiosus endo-beta-1,3-glucanase
  Chiaraluce, R. ; Florio, R. ; Angelaccio, S. ; Gianese, G. ; Lieshout, J.F.T. van; Oost, J. van der; Consalvi, V. (2007)
  FEBS Journal 274 . - p. 6167 - 6179.

• A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes
  Kanai, T. ; Akerboom, A.P. ; Takedomi, S. ; Werken, H.J.G. van de; Blombach, F. ; Oost, J. van der; Murakami, T. ; Atomi, H. ; Imanaka, T. (2007)
  Journal of Biological Chemistry 282 (46). - p. 33659 - 33670.

• Kinetically controlled refolding of a heat denatured hyperthermostable protein
  Koutsopoulos, S. ; Oost, J. van der; Norde, W. (2007)
  FEBS Journal 274 (22). - p. 5915 - 5923.

• Characterization and structural modeling of a new type of thermostable esterase from Thermotoga maritima
  Levisson, M. ; Oost, J. van der; Kengen, S.W.M. (2007)
  FEBS Journal 274 (11). - p. 2832 - 2842.

• Transcriptional activation by CprK1 is regulated by protein structural changes induced by effector binding and redox state
  Mazon, H. ; Gabor, K. ; Leys, D. ; Heck, A.J.R. ; Oost, J. van der; Heuvel, R.H.H. van den (2007)
  Journal of Biological Chemistry 282 (15). - p. 11281 - 11290.

• Crystallization and preliminary crystallographic analysis of an esterese with a novel domein from the hyperthermophile Thermotoga maritima
  Sun, L. ; Levisson, M. ; Hendriks, S.N.A. ; Akveld, T. ; Kengen, S.W.M. ; Dijkstra, B.W. ; Oost, J. van der (2007)
  Acta Crystallographica Section F. Structural Biology and Crystallization Communications 63 (9). - p. 777 - 779.

• Hyperthermophilic enzymes - stability, activity and implementation strategies for high temperature applications
  Unsworth, L.D. ; Oost, J. van der; Koutsopoulos, S. (2007)
  FEBS Journal 274 (16). - p. 4044 - 4056.

• Biochemical and structural exploration of the catalytic capacity of Sulfolobus KDG aldolases
  Wolterink-van Loo, S. ; Eerde, A. van; Siemerink, M.A.J. ; Akerboom, A.P. ; Dijkstra, B.W. ; Oost, J. van der (2007)
  Biochemical Journal 403 . - p. 421 - 430.

• Purification, crystallization and preliminary crystallographic analysis of GTP-binding protein from the hyperthermophilic archaeon Sulfolobus solfataricus
  Wu Hao, ; Sun, L. ; Brouns, S.J.J. ; Fu, S. ; Akerboom, A.P. ; Li, X. ; Oost, J. van der (2007)
  Acta Crystallographica Section F. Structural Biology and Crystallization Communications 63 (3). - p. 239 - 241.

2006

• Evidence supporting a cis-enediol-based mechanism for Pyrococcus furiosus phosphoglucose isomerase
  Berrisford, J.M. ; Hounslow, A.M. ; Akerboom, A.P. ; Hagen, W.R. ; Brouns, S.J.J. ; Oost, J. van der; Murray, I.A. ; Blackburn, G.M. ; Waltho, J.P. ; Rice, D.W. ; Baker, P.J. (2006)
  Journal of Molecular Biology 358 (5). - p. 1353 - 1366.

• Identification of the missing links in prokaryotic pentose oxidation pathways: evidence for enzyme recruitment
  Brouns, S.J.J. ; Walther, J. ; Snijders, A.P. ; Werken, H.J.G. van de; Willemen, H.L.D.M. ; Worm, P. ; Vos, M.G. de; Andersson, A. ; Lundgren, M. ; Mazon, H.F. ; Heuvel, R.H.H. van den; Nilsson, P. ; Salmon, L. ; Vos, W.M. de; Wright, P.C. ; Bernander, R. ; Oost, J. van der (2006)
  Journal of Biological Chemistry 281 (37). - p. 27378 - 27388.

• Identification of a novel alpha-galatosidase from the hyperthermophilic archaeon Sulfolobus solfataricus
  Brouns, S.J.J. ; Smits, N. ; Wu, H. ; Wright, P.C. ; Snijders, A.P.L. ; Vos, W.M. de; Oost, J. van der (2006)
  Journal of Bacteriology 188 (7). - p. 2392 - 2399.

• Fortuitous structure determination of as-isolated Escheria coli bacterioferritin in a novel crystal form
  Eerde, A. van; Wolterink-van Loo, S. ; Oost, J. van der; Dijkstra, B. (2006)
  Acta Crystallographica Section F. Structural Biology and Crystallization Communications 62 (11). - p. 1061 - 1066.

• Two novel conjugative plasmids from a single strain of Sulfolobus
  Erauso, G. ; Stedman, K.M. ; Werken, H.J.G. van de; Zillig, W. ; Oost, J. van der (2006)
  Microbiology 152 (7). - p. 1951 - 1968.

• Molecular characterization of a conserved archaeal copper resistance (cop) gene cluster and its copper-responsive regulator in Sulfolobus solfataricus P2
  Ettema, T.J.G. ; Brinkman, A.B. ; Lamers, P.P. ; Kornet, N. ; Vos, W.M. de; Oost, J. van der (2006)
  Microbiology 152 (7). - p. 1969 - 1979.

• Characterization of CprK1, a CRP/FNR-type transcriptional regulator of halorespiration from Desulfitobacterium hafniense
  Gabor, K. ; Verissimo, C.S. ; Cyran, B.C. ; Horst, P. Ter; Meijer, N.P. ; Smidt, H. ; Vos, W.M. de; Oost, J. van der (2006)
  Journal of Bacteriology 188 (7). - p. 2604 - 2613.

• Improving the performance of a quadrupole time-of-flight instrument for macromolecular mass spectrometry
  Heuvel, R.H.H. van den; Duijn, E. van; Mazon, H. ; Synowsky, S.A. ; Lorenzen, K. ; Versluis, C. ; Brouns, S.J.J. ; Langridge, D. ; Oost, J. van der; Hoyes, J. ; Heck, C.K. (2006)
  Analytical Chemistry 78 (21). - p. 7473 - 7483.

• CprK crystal structures reveal mechanism for transcriptional control of halorespiration
  Joyce, M.G. ; Levy, C. ; Gabor, K. ; Pop, S.M. ; Biehl, B.D. ; Doukov, T.I. ; Ryter, J.M. ; Mazon, H. ; Smidt, H. ; Heuvel, R.H.H. van den; Ragsdale, S.W. ; Oost, J. van der; Leys, D. (2006)
  Journal of Biological Chemistry 281 (38). - p. 28318 - 28325.

• Influence of temperature on the production of archaeal thermoactive alcohol dehydrogenases from Pyrococcus furiosus with recombinant E. coli
  Kube, J. ; Brokamp, C. ; Machielsen, M.P. ; Oost, J. van der; Markl, H. (2006)
  Extremophiles 10 (3). - p. 221 - 227.

• Production and characterization of a thermostable L-threonine dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus
  Machielsen, M.P. ; Oost, J. van der (2006)
  FEBS Journal 273 (12). - p. 2722 - 2729.

• Production and characterization of a thermostable alcohol dehydrogenase that belongs to the aldo-keto reductase superfamily
  Machielsen, M.P. ; Uria, A.R. ; Kengen, S.W.M. ; Oost, J. van der (2006)
  Applied and Environmental Microbiology 72 (1). - p. 233 - 238.

• Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis
  Snijders, B.P.L. ; Walther, J. ; Peter, S. ; Kinnman, I. ; Vos, M.J.G. de; Werken, H.J.G. van de; Brouns, S.J.J. ; Oost, J. van der; Wright, P.C. (2006)
  Proteomics 6 (5). - p. 1518 - 1529.

• Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family
  Thaw, P. ; Sedelnikova, S.E. ; Muranova, T. ; Wiese, S. ; Ayora, S. ; Alonso, J.C. ; Brinkman, A.B. ; Akerboom, A.P. ; Oost, J. van der; Rafferty, J.B. (2006)
  Nucleic acids research 34 (5). - p. 1439 - 1449.

• Identification of a glycolytic regulon in the Archaea Pyrococcus and Thermococcus
  Werken, H.J.G. van de; Verhees, C.H. ; Akerboom, A.P. ; Vos, W.M. de; Oost, J. van der (2006)
  FEMS Microbiology Letters 260 (1). - p. 69 - 76.

2005

• The semi-phosphorylative Entner-Doudoroff pathway in hyperthermophilic archaea: a re-evaluation
  Ahmed, H. ; Ettema, T.J.G. ; Tjaden, B. ; Geerling, A.C.M. ; Oost, J. van der; Siebers, B. (2005)
  Biochemical Journal 390 (2). - p. 529 - 540.

• Engineering a selectable marker for hyperthermophiles
  Brouns, S.J.J. ; Wu, H. ; Akerboom, A.P. ; Turnbull, A.P. ; Vos, W.M. de; Oost, J. van der (2005)
  Journal of Biological Chemistry 280 (12). - p. 11422 - 11431.

• Calcium-induced tertiary structure modifications of endo-B-1,3-glucanase form Pyrococcus furiosus in 7.9 M guanidinium chloride
  Chiaraluce, R. ; Gianese, G. ; Angelaccio, S. ; Florio, R. ; Lieshout, J.F.T. van; Oost, J. van der; Consalvi, V. (2005)
  Biochemical Journal 386 (3). - p. 515 - 524.

• Discovering novel biology by in silico archaeology
  Ettema, T.J.G. ; Vos, W.M. de; Oost, J. van der (2005)
  Nature Reviews Microbiology 3 (11). - p. 859 - 869.

• Cloning and expression of islandisin, a new thermostable subtilisin from Fervidobacterium islandicum, in Escheria coli
  Godde, C. ; Sahm, K. ; Brouns, S.J.J. ; Kluskens, L.D. ; Oost, J. van der; Vos, W.M. de; Antranikian, G. (2005)
  Applied and Environmental Microbiology 71 (7). - p. 3951 - 3958.

• Characterisation and mode of action of an exopolygalacturonase from the hyperthermophilic bacterium Thermotoga maritime
  Kluskens, L.D. ; Alebeek, G.J.W.M. van; Walther, J. ; Voragen, A.G.J. ; Vos, W.M. de; Oost, J. van der (2005)
  FEBS Journal 272 (21). - p. 5464 - 5473.

• Structural features of a hyperthermostable endo-beta-1,3-glucanase in solution and adsorbed on 'invisible' particles
  Koutsopoulos, S. ; Oost, J. van der; Norde, W. (2005)
  Biophysical Journal 88 (1). - p. 467 - 474.

• Conformational studies on a hyperthermostable enzyme
  Koutsopoulos, S. ; Oost, J. van der; Norde, W. (2005)
  FEBS Journal 272 (21). - p. 5484 - 5496.

• In situ structure and activity studies of an enzyme adsorbed on spectroscopically undetectable particles
  Koutsopoulos, S. ; Tjeerdsma, A.M. ; Lieshout, J.F.T. van; Oost, J. van der; Norde, W. (2005)
  Biomacromolecules 6 (3). - p. 1176 - 1184.

• Temperature-dependent structural and functional features of a hyperthermostable enzyme using elastic neutron scattering
  Koutsopoulos, S. ; Oost, J. van der; Norde, W. (2005)
  Proteins : Structure, Function, and Bioinformatics 61 (2). - p. 377 - 384.

2004

• The structures of inhibitor complexes of Pyrococcus furiosus Phosphoglucose Isomerase provide insights into substrate binding and catalysis
  Berrisford, J.M. ; Akerboom, A.P. ; Brouns, S.J.J. ; Sedelnikova, S.E. ; Turnbull, A.P. ; Oost, J. van der; Salmon, L. ; Hardre, R. ; Murray, I.A. ; Blackburn, G.M. ; Rice, D.W. ; Baker, P. (2004)
  Journal of Molecular Biology 343 (3). - p. 649 - 657.

• Identification and functional verification of Archaeal-type phosphoenolpyruvate carboxylase, a missing link in Archaeal central carbohydrate metabolism
  Ettema, T.J.G. ; Makarova, K.S. ; Jellema, G.L. ; Gierman, H.J. ; Koonin, E.V. ; Huynen, M.A. ; Vos, W.M. de; Oost, J. van der (2004)
  Journal of Bacteriology 186 (22). - p. 7754 - 7762.

• Substrate specificity and mechanism from the structure of Pyrococcus furiosus galactokinase
  Hartley, A. ; Glynn, S.E. ; Barynin, V. ; Baker, P.J. ; Sedelnikova, S.E. ; Verhees, C.H. ; Geus, D. de; Oost, J. van der; Timson, D.J. ; Reece, R.J. ; Rice, D.W. (2004)
  Journal of Molecular Biology 337 (2). - p. 387 - 398.

• Transcription of the Rod-Shaped Viruses SIRV1 and SIRV2 of the Hyperthermophilic Archaeon Sulfolobus
  Kessler, A. ; Brinkman, A.B. ; Oost, J. van der; Prangishvili, D. (2004)
  Journal of Bacteriology 186 (22). - p. 7745 - 7753.

• Crystal structure of fervidolysin from Fervidobacterium pennivorans, a keratinolytic enzyme related to subtilisin
  Kim, J.S. ; Kluskens, L.D. ; Vos, W.M. de; Huber, R. ; Oost, J. van der (2004)
  Journal of Molecular Biology 335 (3). - p. 787 - 797.

• Adsorption of an endoglucanase from the hyperthermophilic Pyrococcus furiosus of hydrophobic (polysterene) and hydrophilic (silica) surfaces increases protein heat stability
  Koutsopoulos, S. ; Oost, J. van der; Norde, W. (2004)
  Langmuir 20 (15). - p. 6401 - 6406.

• Hydrolase and glycosynthase activity by endo-1,3-B-glucanase from the thermophile Pyrococcus furiosus
  Lieshout, J.F.T. van; Faijes, M. ; Nieto, J. ; Oost, J. van der; Planas, A. (2004)
  Archaea : an international microbiological journal 1 (4). - p. 285 - 292.

• Substrate-induced production and secretion of cellulases by Clostridium acetobutylicum
  Lopez Contreras, A.M. ; Gabor, K. ; Martens, A.A. ; Renckens, B.A.M. ; Claassen, P.A.M. ; Oost, J. van der; Vos, W.M. de (2004)
  Applied and Environmental Microbiology 70 (9). - p. 5238 - 5243.

2003

• Purification, crystallization and preliminary crytallographic analysis of phosphoglucose isomerase from the hyperthermophilic archaeon Pyrococcus furiosus
  Akerboom, A.P. ; Turnbull, A.P. ; Hargreaves, D. ; Fischer, M. ; Geus, D. de; Sedelnikova, S.E. ; Berrisford, J.M. ; Baker, P.J. ; Verhees, C.H. ; Oost, J. van der; Rice, D.W. (2003)
  Acta Crystallographica Section D-Biological Crystallography 59 . - p. 1822 - 1823.

• Crystal structure of Pyrococcus furiosus phosphoglucose isomerase: Implications for substrate binding and catalysis
  Berrisford, J.M. ; Akerboom, A.P. ; Turnbull, A.P. ; Geus, D. de; Sedelnikova, S.E. ; Staton, I. ; McLeod, C.W. ; Verhees, C.H. ; Oost, J. van der; Rice, D.W. ; Baker, P.J. (2003)
  Journal of Biological Chemistry 278 . - p. 33290 - 33297.

• The Lrp family of transcriptional regulators
  Brinkman, A.B. ; Ettema, T.J.G. ; Vos, W.M. de; Oost, J. van der (2003)
  Molecular Microbiology 48 (2). - p. 287 - 294.

• An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi
  Cohen, G. ; Barbe, V. ; Flament, D. ; Galperin, M. ; Heilig, R. ; Lecompte, O. ; Prieur, D. ; Poch, O. ; Querellou, J. ; Thierry, J.C. ; Oost, J. van der; Weissenbach, J. ; Zivanovic, Y. ; Forterre, P. (2003)
  Molecular Microbiology 47 . - p. 1495 - 1512.

• TRASH, a novel metal binding domain predicted to be involved in heavy metal sensing, trafficking and resistance
  Ettema, T.J.G. ; Huynen, M. ; Vos, W.M. de; Oost, J. van der (2003)
  Trends in Biochemical Sciences 28 (4). - p. 170 - 173.

• Cloning, purification, crystallization and preliminary crystallographic analysis of galactokinase from Pyrococcus furiosus
  Geus, D. de; Hartley, A.P. ; Sedelnikova, S.E. ; Glynn, S.E. ; Baker, P.J. ; Verhees, C.H. ; Oost, J. van der; Rice, D.W. (2003)
  Acta Crystallographica Section D-Biological Crystallography 59 (10). - p. 1819 - 1821.

• Molecular characterization of H2O2-forming NADH oxidases from Archeaoglobus fulgidus
  Kengen, S.W.M. ; Oost, J. van der; Vos, W.M. de (2003)
  European Journal of Biochemistry 270 (13). - p. 2885 - 2894.

• Molecular and biochemical characterisation of the thermoactive family 1 pectase lyase from the hyperthermophilic bacterium Thermotoga maritima
  Kluskens, L.D. ; Alebeek, G.J.W.M. van; Voragen, A.G.J. ; Vos, W.M. de; Oost, J. van der (2003)
  Biochemical Journal 370 . - p. 651 - 659.

• Identification and molecular characterization of a novel type of alpha-galactosidase from Pyrococcus furiosus
  Lieshout, J.F.T. van; Verhees, C.H. ; Ettema, T.J.G. ; Sar, S. van der; Imamura, H. ; Matsuzawa, H. ; Oost, J. van der; Vos, W.M. de (2003)
  Biocatalysis and Biotransformation 21 (4-5). - p. 243 - 252.

• Production by Clostridium acetobutylicum ATCC 824 of CelG, a cellulosomal glycoside hydrolase belonging to family 9
  Lopez Contreras, A.M. ; Martens, A.A. ; Szijarto, N. ; Mooibroek, A. ; Claassen, P.A.M. ; Oost, J. van der; Vos, W.M. de (2003)
  Applied and Environmental Microbiology 69 (2). - p. 869 - 877.

• The activity of hyperthermophilic glycosynthases is significantly enhanced at acidic pH
  Perugino, G. ; Trincone, A. ; Giordano, A. ; Oost, J. van der; Kaper, T. ; Rossi, M. ; Moracci, M. (2003)
  Biochemistry 42 . - p. 8484 - 8493.

• Unique features of glycolysis in Archaea
  Verhees, C.H. ; Kengen, S.W.M. ; Tuininga, J.E. ; Schut, G.J. ; Adams, M.W.W. ; Vos, W.M. de; Oost, J. van der (2003)
  Biochemical Journal 375 . - p. 231 - 246.

2002

• The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability
  Brinkman, A.B. ; Bell, S.D. ; Lebbink, R.J. ; Vos, W.M. de; Oost, J. van der (2002)
  Journal of Biological Chemistry 277 . - p. 29537 - 29549.

• Persistence of tertiary structure in 7.9M guanidinium chloride : the case of endo B-1,3-glucanase from Pyrococcus furiosus
  Chiaraluce, R. ; Oost, J. van der; Lebbink, J.H.G. ; Kaper, T. ; Consalvi, V. (2002)
  Biochemistry 41 . - p. 14624 - 14632.

• A novel ligand-binding domain involved in allosteric regulation of amino acid metabolism in prokaryotes
  Ettema, T.J.G. ; Brinkman, A.B. ; Tani, T.H. ; Rafferty, J.B. ; Oost, J. van der (2002)
  Journal of Biological Chemistry 277 (40). - p. 37464 - 37468.

• DNA family shuffling of hyperthermostable beta-glycosidases
  Kaper, T. ; Brouns, S.J.J. ; Geerling, A.C.M. ; Vos, W.M. de; Oost, J. van der (2002)
  Biochemical Journal . - p. 461 - 470.

• Substrate specificity engineering of beta-mannosidase and betaglucosidase from Pyrococcus by exchange of unique active site residues
  Kaper, T. ; Heusden, H.H. van; Loo, B. van; Vasella, A. ; Oost, J. van der; Vos, W.M. de (2002)
  Biochemistry 41 . - p. 4147 - 4155.

• Molecular characterization of fervidolysin, a subtilisin-like serine protease from the thermophilic bacterium Fervidobacterium pennivorans
  Kluskens, L.D. ; Voorhorst, W.G. ; Siezen, R.J. ; Schwerdfeger, R.M. ; Antranikian, G. ; Oost, J. van der; Vos, W.M. de (2002)
  Extremophiles 6 . - p. 185 - 194.

• Molecular and biochemical characterisation of the thermo-active family 1 pectate lyase from the hyperthermophilic bacterium Thermotoga maritima
  Kluskens, L.D. ; Alebeek, G.J.W.M. van; Voragen, A.G.J. ; Vos, W.M. de; Oost, J. van der (2002)
  Biochemical Journal 20 . - 34 p.

• Molecular characterization of phosphoglycerate mutase in archaea
  Oost, J. van der; Huynen, M.A. ; Verhees, C.H. (2002)
  FEMS Microbiology Letters 212 . - p. 111 - 120.

• Biochemical adaptations of two sugar kinases from the hyperthermophilic archaeon Pyrococcus furiosus
  Verhees, C.H. ; Koot, D.G. ; Ettema, T.J. ; Dijkema, C. ; Vos, W.M. de; Oost, J. van der (2002)
  Biochemical Journal 366 . - p. 121 - 127.

• Molecular and Biochemical Characterization of a Distinct Type of Fructose-1,6- Bisphosphatase from Pyrococcus furiosus
  Verhees, C.H. ; Akkerboom, J. ; Schiltz, J. ; Vos, W.M. de; Oost, J. van der (2002)
  Journal of Bacteriology 184 . - p. 3401 - 3405.

• Molecular analysis of the role of two aromatic aminotransferases and a broad-specificity aspartate aminotransferase in the aromatic amino acid metabolism of Pyrococcus furiosus
  Ward, D.E. ; Vos, W.M. de; Oost, J. van der (2002)
  Archaea : an international microbiological journal 1 . - p. 133 - 141.

• Characterization of plasmid pRT1 from Pyrococcus sp. strain JT1
  Ward, D.E. ; Revet, I.M. ; Nandakumar, R. ; Tuttle, J.H. ; Vos, W.M. de; Oost, J. van der; DiRuggiero, J. (2002)
  Journal of Bacteriology 184 . - p. 2561 - 2566.

2001

• The archaeal TFIIE homologue facilitates transcription initiation by enhancing TATA-box recognition
  Bell, S.D. ; Brinkman, A.B. ; Oost, J. van der; Jackson, S.P. (2001)
  Embo Reports 2 . - p. 133 - 138.

• Crystal structure of an ACh-binding protein reveals the ligand-binding domain of nicotinic receptors
  Brejc, K. ; Dijk, W.J. van; Klaassen, R.V. ; Schuurmans, M. ; Oost, J. van der; Smit, A.B. ; Sixma, T.K. (2001)
  Nature 411 . - p. 269 - 276.

• Modularity in the gain and loss of genes: applications for function prediction
  Ettema, T.J.G. ; Oost, J. van der; Huynen, M. (2001)
  Trends in Genetics 17 (9). - p. 485 - 487.

• Improved oligosaccharide synthesis by protein engineering of b-glucosidase from hyperthermophilic Pyrococcus furiosus
  Hanson, T. ; Kaper, T. ; Oost, J. van der; Vos, W.M. de (2001)
  Biotechnology and Bioengineering 73 . - p. 203 - 210.

• Cloning and expression of the catalase-peroxidase gene from the hyperthermophilic archaeon Archaeoglobus fulgidus and characterization of the enzyme
  Kengen, S.W.M. ; Bikker, F. ; Vos, W.M. de; Oost, J. van der (2001)
  Extremophiles 5 . - p. 323 - 332.

• ADP-dependent glucokinase and phosphofructo-kinase from Pyrococcus furiosus
  Kengen, S.W.M. ; Tuininga, J.E. ; Verhees, C.H. ; Oost, J. van der; Stams, A.J.M. ; Vos, W.M. de (2001)
  Methods in Enzymology 331 . - p. 41 - 53.

• The ß-glucosidase CelB from Pyrococcus furiosus: Production by Escherichia coli, purification, and in vitro evolution
  Lebbink, J.H.G. ; Kaper, T. ; Kengen, S.W.M. ; Oost, J. van der; Vos, W.M. de (2001)
  Methods in Enzymology 330 . - p. 364 - 379.

• Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus
  Leonard, P.M. ; Smits, S.H.J. ; Svetlana, E. ; Sedelnikova, S.E. ; Brinkman, A.B. ; Vos, W.M. de; Oost, J. van der; Rice, D.W. ; Rafferty, J.B. (2001)
  The EMBO Journal 20 . - p. 990 - 997.

• Clostridium beijerinckii cells expressing Neocallimastix patriciarum glycoside hydrolases show enhanced Lichenan utilization and solvent production
  Lopez-Contreras, A. ; Oost, J. van der; Claassen, P. ; Mooibroek, H. ; Vos, W.M. de (2001)
  Applied and Environmental Microbiology 67 (11). - p. 5127 - 5133.

• Properties of the recombinant a-glucosidase from Sulfolobus solfataricus in relation to starch processing
  Martino, A. ; Schiraldi, C. ; Fusco, S. ; Lernia, I. Di; Costabile, T. ; Pellicano, T. ; Marotta, M. ; Generoso, M. ; Oost, J. van der; Sensen, C.W. (2001)
  Journal of Molecular Catalysis. B, Enzymatic 11 . - p. 787 - 794.

• Genetic and biochemical characterization of a short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus
  Oost, J. van der; Voorhorst, W.G.B. ; Kengen, S.W.M. ; Geerling, A.C.M. ; Wittenhorst, V. ; Gueguen, Y. ; Vos, W.M. de (2001)
  European Journal of Biochemistry 268 . - p. 3062 - 3068.

• Cytochromes c550, c552, c1 in the electron transport network of Paracoccus denitrificans: redundant or subtly different in function?
  Otten, M.F. ; Oost, J. van der; Reijnders, W.N.M. ; Westerhoff, H.V. ; Ludwig, B. ; Spanning, R.J.M. van (2001)
  Journal of Bacteriology 183 . - p. 7017 - 7026.

• The catalytic potency of ß-glucosidase from Pyroccus furiosus in the direct glucosylation reaction
  Roode, B.M. de; Meer, T.D. van der; Kaper, T. ; Franssen, M.C.R. ; Padt, A. van der; Oost, J. van der; Boom, R.M. (2001)
  Enzyme and Microbial Technology 29 . - p. 621 - 624.

• Crystallization and quaternary structure analysis of an Lrp-like regulatory protein from the hyperthermophile Pyrococcus furiosus
  Sedelnikova, S.E. ; Smits, S.H.J. ; Leonard, P.M. ; Brinkman, A.B. ; Oost, J. van der; Rafferty, J.B. (2001)
  Acta Crystallographica Section D-Biological Crystallography 57 (6). - p. 886 - 888.

• The complete genome of the Crenarchaeote Sulfolobus solfataricus P2
  She, Q. ; Singh, R.K. ; Confalonieri, F. ; Zivanovic, Y. ; Allard, G. ; Awayez, M.J. ; Chan-Weiher, C.C.Y. ; Clausen, I.G. ; Curtis, B.A. ; Moors, A. de; Heikamp-de Jong, I. ; Oost, J. van der (2001)
  Proceedings of the National Academy of Sciences of the United States of America 95 . - p. 7835 - 7840.

• Archaeal fructose-1,6-bisphosphate aldolases constitute a new family of archaeal type Class I aldolase
  Siebers, B. ; Tjaden, B. ; Brinkmann, H. ; Dorr, C. ; Lilie, H. ; Oost, J. van der; Verhees, C.H. (2001)
  Journal of Biological Chemistry 276 . - p. 28710 - 28718.

• Development of a gene cloning and inactivation system for the halorespiring Desulfitobacterium dehalogenans
  Smidt, H. ; Oost, J. van der; Vos, W.M. de (2001)
  Applied and Environmental Microbiology 67 . - p. 591 - 597.

• ADP-dependent Phosphofructokinases in Mesophilic and Thermophilic Methanogenic Archaea
  Verhees, C.H. ; Tuininga, J.E. ; Kengen, S.W.M. ; Stams, A.J.M. ; Oost, J. van der; Vos, W.M. de (2001)
  Journal of Bacteriology 183 . - p. 7145 - 7153.

• The Phosphoglucose Isomerase from the Hyperthermophilic Archaeon Pyrococcus furiosus is a Unique Glycolytic Enzyme that belongs to the Cupin Superfamily
  Verhees, C.H. ; Huynen, M.A. ; Ward, D.E. ; Schiltz, E. ; Vos, W.M. de; Oost, J. van der (2001)
  Journal of Biological Chemistry 276 . - p. 40926 - 40932.

• Purification, characterization, and molecular modelling of pyrolysins and other thermostable serine proteases from hyperthermophilic microorganisms
  Vos, W.M. de; Voorhorst, W.G.M. ; Kluskens, L.D. ; Dijkgraaf, M. ; Oost, J. van der; Siezen, R. (2001)
  Methods in Enzymology 330 . - p. 383 - 393.

• The NADH oxidase from Pyrococcus furiosus: implications for the protection of anaerobic hyperthermophiles against oxidative stress
  Ward, D.E. ; Donnelly, C. ; Mullendore, M.E. ; Oost, J. van der; Vos, W.M. de; Crane III, E.J. (2001)
  European Journal of Biochemistry 268 . - p. 5816 - 5823.

2000

• The transcriptional regulator LrpA from the hyperthermophilic archaeon Pyrococcus furiosus is negatively autoregulated
  Brinkman, A.B. ; Dahlke, I. ; Tuininga, J.E. ; Lammers, T. ; Dumay, V. ; Heus, E. de; Lebbink, J.H.G. ; Thomm, M. ; Vos, W.M. de; Oost, J. van der (2000)
  Journal of Biological Chemistry 275 . - p. 38160 - 38169.

• Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2
  Charlebois, R. ; Confalonieri, F. ; Curtis, B. ; Doolittle, W.F. ; Duguet, M. ; Erauso, G. ; Faguy, D. ; Gaasterland, T. ; Garrett, R.A. ; Gordon, P. ; Kozera, C. ; Medina, N. ; Oost, J. van der; Peng, X. ; Ragan, M. ; She, Q. ; Singh, R.K. (2000)
  Genome 43 (1). - p. 116 - 136.

• Comparative structural analysis and substrate specificity engineering of the hyperthermostable b-glucosidase CelB from Pyrococcus furiosus
  Kaper, T. ; Lebbink, J.H.G. ; Pouwels, J. ; Kopp, J. ; Schulz, G.E. ; Oost, J. van der; Vos, W.M. de (2000)
  Biochemistry 39 . - p. 4963 - 4970.

• Improving low-temperature catalysis in the hyperthermostable Pyrococcus furiosus b-glucosidase CelB by directed evolution
  Lebbink, J.H.G. ; Kaper, T. ; Bron, P. ; Oost, J. van der; Vos, W.M. de (2000)
  Biochemistry 39 . - p. 3656 - 3665.

• The plasmid pGS5 from the hyperthermophilic archaeon Archaeoglobus profundus is negatively supercoiled
  Lopez-Garcia, P. ; Forterre, P. ; Oost, J. van der; Erauso, G. (2000)
  Journal of Bacteriology 182 . - p. 4998 - 5000.

• Identification and molecular characterization of the first a-xylosidase from an Archaeon
  Moracci, M. ; Cobucci-Ponzano, B. ; Trincone, A. ; Fusco, S. ; Rosa, M. de; Oost, J. van der; Sensen, C.W. ; Charlebois, R.L. ; Rossi, M. (2000)
  Journal of Biological Chemistry 275 . - p. 22082 - 22089.

• Activity and stability of hyperthermophilic enzymes : a comparative study on two archaeal b-glycosidases
  Pouwels, J. ; Moracci, M. ; Cobucci-Ponzano, B. ; Perugino, G. ; Oost, J. van der; Kaper, T. ; Lebbink, J.H.G. ; Vos, W.M. de; Ciaramella, M. ; Rossi, M. (2000)
  Extremophiles 4 . - p. 157 - 164.

• A BAC library and paired-PCR approach to mapping and completing the genome sequence of Sulfolobus solfataricus P2 : an EC perspective
  She, Q. ; Confalonieri, F. ; Zivanovic, Y. ; Medina, N. ; Billault, A. ; Awayez, M.J. ; Thi-Ghoc, H.P. ; Thi-Pham, B.T. ; Oost, J. van der; Duguet, M. ; Garrett, R.A. (2000)
  Dna sequence 11 . - p. 183 - 136.

• Transcriptional regulation of the cpr gene cluster in ortho-chlorophenol-respiring Desulfitobacterium dehalogenans
  Smidt, H. ; Leest, M. van; Oost, J. van der; Vos, W.M. de (2000)
  Journal of Bacteriology 182 (20). - p. 5683 - 5691.

• Halorespiring bacteria-molecular characterization and detection
  Smidt, H. ; Akkermans, A.D.L. ; Oost, J. van der; Vos, W.M. de (2000)
  Enzyme and Microbial Technology 27 . - p. 812 - 820.

• Purification and characterization of the alanine aminotransferase from the hyperthermophilic Archaeon Pyrococcus furiosus and its role in alanine production
  Ward, D.E. ; Kengen, S.W.M. ; Oost, J. van der; Vos, W.M. de (2000)
  Journal of Bacteriology 182 . - p. 2559 - 2566.

1999

• Glutamate dehydrogenase from hyperthermophilic bacteria and archaea: determinants of thermostability and catalysis at extremely high temperatures
  Lebbink, J.H.G. ; Kengen, S.W.M. ; Oost, J. van der; Vos, W.M. de (1999)
  Journal of Molecular Catalysis. B, Enzymatic 7 . - p. 133 - 145.

• Engineering activity and stability of Thermotoga maritima glutamate dehydrogenase. II: Construction of a 16-residue ion-pair network at the subunit interface
  Lebbink, J.H.G. ; Knapp, S. ; Oost, J. van der; Rice, D. ; Ladenstein, R. ; Vos, W.M. de (1999)
  Journal of Molecular Biology 289 . - p. 357 - 369.

• An Lrp-like protein of the hyperthermophilic archaeon Sulfolobus solfataricus which binds to its own promoter
  Napoli, A. ; Oost, J. van der; Sensen, C.W. ; Charlebois, R.L. ; Rossi, M. ; Ciaramella, M. (1999)
  Journal of Bacteriology 181 . - p. 1474 - 1480.

• Purification and molecular characterization of ortho-chlorophenol reductive dehalogenase, a key enzyme of halorespiration in Desulfitobacterium dehalogenans
  Pas, B.A. van de; Smidt, H. ; Hagen, W.R. ; Oost, J. van der; Schraa, G. ; Stams, A.J.M. ; Vos, W.M. de (1999)
  Journal of Biological Chemistry 274 (29). - p. 20287 - 20292.

• Random transposition by Tn916 in Desulfitobacterium dehalogenans allows for isolation and characterization of halorespiration-deficient mutants
  Smidt, H. ; Song, D. ; Oost, J. van der; Vos, W.M. de (1999)
  Journal of Bacteriology 181 (22). - p. 6882 - 6888.

• Molecular and biochemical characterization of the ADP-dependent phosphofructokinase from the hyperthermophilic archaeon Pyrococcus furiosus
  Tuininga, J.E. ; Verhees, C.H. ; Oost, J. van der; Kengen, S.W.M. ; Stams, A.J.M. ; Vos, W.M. de (1999)
  Journal of Biological Chemistry 274 (30). - p. 21023 - 21028.

• Transcriptional regulation in the hyperthermophilic archaeon Pyrococcus furiosus: Coordinated expression of divergently oriented genes in response to ß-linked glucose polymers
  Voorhorst, W.G.B. ; Gueguen, Y. ; Geerling, A.C.M. ; Schut, G. ; Dahlke, I. ; Thomm, M. ; Oost, J. van der; Vos, W.M. de (1999)
  Journal of Bacteriology 181 (12). - p. 3777 - 3783.

1998

• Synthesis of oligosaccharides catalyzed by thermostable Beta-glucosidase from pyrococcus furiosus
  Boon, M.A. ; Oost, J. van der; Vos, W.M. de; Janssen, A.E.M. ; Riet, K. van 't (1998)
  Applied Biochemistry and Biotechnology 75 . - p. 269 - 278.

• Engineering activity and stability of Thermotoga maritima glutamate dehydrogenase. I. Introduction of a six-residue ion-pair network in the hinge region.
  Lebbink, J.H.G. ; Knapp, S. ; Oost, J. van der; Rice, D. ; Ladenstein, R. ; Vos, W.M. de (1998)
  Journal of Molecular Biology 280 . - p. 287 - 296.

• Molecular biology of hyperthermophilic Archaea.
  Oost, J. van der; Ciaramella, M. ; Moracci, M. ; Pisani, F.M. ; Rossi, M. ; Vos, W.M. de (1998)
  Advances in biochemical engineering 61 . - p. 87 - 115.

• The ferredoxin-dependent conversion of glyceraldehyde-3-phosphate in the hyperthermophilic archaeon Pyrococcus furiosus represents a novel site of glycolytic regulation.
  Oost, J. van der; Schut, G. ; Kengen, S.W.M. ; Hagen, W.R. ; Thomm, M. ; Vos, W.M. de (1998)
  Journal of Biological Chemistry 273 . - p. 28149 - 28154.

• Sugar utilization and its control in hyperthermophiles.
  Vos, W.M. de; Kengen, S.W.M. ; Voorhorst, W.G.B. ; Oost, J. van der (1998)
  Extremophiles 2 . - p. 201 - 205.

• Making more of milk sugar by engineering lactic acid bacteria.
  Vos, W.M. de; Hols, P. ; Kranenburg, R. van; Luesink, E. ; Kuipers, O.P. ; Oost, J. van der; Kleerebezem, M. ; Hugenholtz, J. (1998)
  International Dairy Journal 8 . - p. 227 - 233.

1997

• Molecular and biochemical characterization of anendo-(-1,3-glucanase of the hyperthermophilic archaeon Pyrococcus furiosus.
  Gueguen, Y. ; Voorhorst, W.G.B. ; Oost, J. van der; Vos, W.M. de (1997)
  Journal of Biological Chemistry 272 . - p. 31258 - 31264.

• Stabilization of enzymes against thermal stress and freeze-drying by mannosylglycerate
  Ramos, A. ; Raven, N. ; Sharp, R.J. ; Bartolucci, S. ; Rossi, M. ; Cannio, R. ; Lebbink, J. ; Oost, J. van der; Vos, W.M. de; Santos, H. (1997)
  Applied and Environmental Microbiology 63 (10). - p. 4020 - 4025.

• Organic solutes accumulated by hyperthermophiles in response to stress: enzyme-stabilizing effects of mannosylglycerate.
  Ramos, A. ; Raven, N. ; Sharp, R. ; Bartolucci, S. ; Rossi, M. ; Cannio, R. ; Lebbink, J. ; Oost, J. van der; Vos, W.M. de; Santos, H. (1997)
  Applied and Environmental Microbiology 63 . - p. 4020 - 4025.

• FnrP and NNR of Paracoccus denitrificans are both members of the FNR family of transcr. activators but have distinct contr. on resp. adaptation in response to oxygen limitation.
  Spanning, R.J.M. van; Boer, A.P.N. de; Reijnders, W.N.M. ; Westerhoff, H.V. ; Stouthamer, A.H. ; Oost, J. van der (1997)
  Molecular Microbiology 23 . - p. 893 - 907.

• Emerging principles in inorganic nitrogen metabolism in Paracoccus denitrificans and related bacteria.
  Stouthamer, A.H. ; Boer, A.P.N. de; Oost, J. van der; Spanning, R.J.M. van (1997)
  Antonie van Leeuwenhoek: : Nederlandsch tijdschrift voor hygiëne, microbiologie en serologie 71 . - p. 33 - 41.

1996

• Structural and functional analysis of aa3-type and cbb3-type cytochrome c oxidases of Paracoccus denitrificans reveals significant differences in proton-pump design.
  Gier, J.W.L. ; Schepper, M. ; Reijnders, W.N.M. ; Dyck, S. van; Slotboom, D.J. ; Warne, A. ; Saraste, M. ; Krab, K. ; Finel, M. ; Stouthamer, A.H. ; Spanning, R.J.M. van; Oost, J. van der (1996)
  Molecular Microbiology 20 . - p. 1247 - 1260.

• Extremophiles.
  Oost, J. van der; Vos, W.M. de; Antranikian, G. (1996)
  Trends in Biotechnology 14 . - p. 415 - 417.

• An alternative model for heme ligation in nitrate reductase and analogous respiratory cytochrome b complexes.
  Oost, J. van der; Nederkoorn, P.H.J. ; Stouthamer, A.H. ; Westerhoff, H.V. ; Spanning, R.J.M. van (1996)
  Molecular Microbiology 22 . - p. 193 - 196.

• Far-red resonance Raman study of copper A in subunit II of cytochrome c oxidase.
  Wallace-Williams, S.E. ; James, C.A. ; Vries, S. de; Saraste, M. ; Lappalainen, P. ; Oost, J. van der; Fabian, M. ; Palmer, G. ; Woodruff, W.H. (1996)
  Journal of the American Chemical Society 118 . - p. 3986 - 3987.

Non-refereed article in a journal

2014

• Purification and Sequencing of DNA Guides from Prokaryotic Argonaute
  Swarts, D.C. ; Westra, E.R. ; Brouns, S.J.J. ; Oost, J. van der (2014)
  Bio-protocol 4 (22).

Books

2011

• Microcanon : wat je beslist moet weten over microbiologie
  Smit, H. ; Doorn, J. van; Oost, J. van der; Reijnders, W. ; Willemsen, P.T.J. (2011)
  Diemen : Veen Magazines, (Wetenschappelijke Bibliotheek van Natuurwetenschap&Techniek 109) - 246

Refereed book chapters

2013

• RNA-mediated Adaptive Immunity in Bacteria and Archaea
  Barrangou, R. ; Oost, J. van der (2013)
  In: CRISPR-Cas Systems Berlin-Heidelberg : Springer Verlag, - 299 p.

• crRNA biogenesis
  Charpentier, E. ; Oost, J. van der; White, M. (2013)
  In: CRISPR-Cas Systems / Barrangou, R., Oost, J. van der, Berlin-Heidelberg : Springer Verlag, - p. 115 - 144.

2011

• Opkomende infectieziekten, ongenode gasten uit verre streken
  Moormann, R.J.M. ; Smit, H. ; Doorn, J. van; Oost, J. van der; Reijnders, W. ; Willemsen, P.T.J. (2011)
  In: Microcanon / Smit, H., Diemen : Natuurwetenschap & techniek, (Wetenschappelijke bibliotheek 109) - 3 p.

2010

• RNA in defense: CRISPRs protect prokaryotes against mobile genetic elements
  Jore, M.M. ; Brouns, S.J.J. ; Oost, J. van der (2010)
  In: RNA Worlds: From Life’s Origins to Diversity in Gene Regulation / Atkins, J.F., Gesteland, R.F., Cech, T.R., New York, U.S.A. : Cold Spring Harbor Laboratory Press, - p. 231 - 242.

2007

• Ribozyme-mediated engineering of circular mRNA and its functional in vivo and in vitro translation
  Lieshout, J.F.T. van; Vroom, W. ; Vos, W.M. de; Oost, J. van der (2007)
  In: Characterization and Engineering of Thermostable Glycoside Hydrolases / van Lieshout, J.F.T., [S.l.] : S.n., - p. 107 - 123.

• Stabilization of an Endo-ß-1,3-1,4-Glucanase by Cyclization
  Lieshout, J.F.T. van; Perez-Gutierrez, O.N. ; Vroom, W. ; Koutsopoulos, S. ; Planas, A. ; Vos, W.M. de; Oost, J. van der (2007)
  In: Characterization and engineering of thermostable glycoside hydrolases / van Lieshout, J.F.T., [S.l.] : S.n., - p. 90 - 106.

2006

• The hyperthermophilic archaeon Sulfolobus : from exploration to exploitation
  Brouns, S.J.J. ; Ettema, T.J.G. ; Stedman, K.M. ; Walther, J. ; Smidt, H. ; Snijders, A.P.L. ; Young, M. ; Bernander, R. ; Wright, P.C. ; Siebers, B. ; Oost, J. van der (2006)
  In: Geothermal Biology and Geochemistry in Yellowstone National Park / Inskeep, W.P., McDermott., T.R., Bozeman : Montana State University Publications, - p. 261 - 276.

• Functional genomics of the thermo-acidophilic archaeon Sulfolobus solfataricus
  Oost, J. van der; Walther, J. ; Brouns, S.J.J. ; Werken, H.J.G. van de; Snijders, A.P.L. ; Wright, P.C. ; Andersson, A. ; Bernander, R. ; Vos, W.M. de (2006)
  In: Extremophiles / Rainey, F.A., Oren, A., New york : Elsevier, (Methods in Microbiology ) - p. 201 - 231.

• The glycolytic pathways of Archaea - evolution by tinkering
  Oost, J. van der; Siebers, B. (2006)
  In: Archaea Biology Oxford : Blackwell, - p. 247 - 259.

Non-refereed book chapters

2002

• Engineering of Thermostable Family 1 B-glycosidases for Saccharide Processing
  Kaper, T. ; Oost, J. van der; Vos, W.M. de (2002)
  In: Carbohydrate bioengineering Interdisciplinary Aproaches / Teeri, T.T., Svensson, B., Gilbert, H.J., Feizi, T., Cambridge : Royal Society of Chemistry, - p. 135 - 142.

2001

• Molecular characterization of key enzymes in halorespiration.
  Smidt, H. ; Akkermans, A.D.L. ; Oost, J. van der; Vos, W.M. de (2001)
  In: Biotechnology for the environment, focus on biotechnology / Agathos, S.N., Reineke, W., Dordrecht : Kluwer Academic Publishers, - p. 200 - 200.

• Genetics and molecular biology of anaerobic reductive dehalogenation. In: Schriftenreihe Biologische Abwasserreinigung
  Smidt, H. ; Oost, J. van der; Vos, W.M. de (2001)
  In: Schriftenreihe Biologische Abwasserreinigung / Technical University Berlin Berlin : - p. 193 - 193.

Non-refereed conference paper

1997

• Molecular characterization of halorespiration.
  Smidt, H. ; Song, D. ; Oost, J. van der; Vos, W.M. de (1997)
  In: International Symposium Environmental Biotechnology, Ostende, Belgium / Verachtert, H., Verstraete, W., - p. 19 - 22.

Book chapters

2001

• Genetics and molecular biology of anaerobic reductive dehalogenation
  Smidt, H. ; Oost, J. van der; Vos, W.M. de (2001)
  In: Anaerobic dehalogenation : Biologische Abwasserreinigung, Berlin 2001 Berlin : - p. 15 - 30.

Reports

2017

• Microbiology Centennial Symposium 2017 : 'Exploring Microbes for the Quality of Life' : 18 -20 October 2017, Wageningen, The Netherlands : Book of Abstracts
  Vos, Willem M. de; Smidt, Hauke ; Oost, John van der; Stams, Fons ; Kengen, Servé (2017)
  Wageningen : Wageningen University & Research, - 120

Book Chapters

2011

• Extremofiele micro-organismen: some like it hot
  Kengen, S.W.M. ; Oost, J. van der (2011)
  In: Microcanon / Smit, H., Reijners, W., van Doorn, J., van der Oost, J., Willemsen, P., Diemen : NVVM, - p. 28 - 31.

• Overleven: De strijd om het bestaan
  Oost, J. van der (2011)
  In: Microcanon / Smit, H., Reijnders, W., van Doorn, J., van der Oost, J., Willemsen, P., Diemen : NVVM, - 288 p.

• Variatie en adaptatie: Lifestyle van micro-organismen
  Oost, J. van der (2011)
  In: Microcanon / Smit, H., Reijnders, W., van Doorn, J., van der Oost, J., Willemsen, P., Diemen : NVVM, - 288 p.

• Archaea: de ontdekking van een nieuwe vorm van leven
  Oost, J. van der (2011)
  In: Microcanon. wat je beslist moet weten over microbiologie / Smit, H., Reijders, W., van Doorn, J., van der Oost, J., Willemsen, P., Diemen : NVVM, - p. Hfst. 3 - Hfst. 3.

Article in news paper/magazine/journal

2011

• Afweer bacteriën ontrafeld
  Oost, J. van der (2011)
  Resource: nieuwssite voor studenten en medewerkers van Wageningen UR .

2010

• Ruimteclub NASA doet spectaculaire vondst (interview met Prof. Dr. John van der Oost)
  Vreede, J. de; Oost, J. van der (2010)
  AD Nieuws . - 1 p.

2002

• Seks in de reageerbuis
  Oost, J. van der (2002)
  Natuur en Techniek . - p. 11 - 11.

• Snelle selectie in de reageerbuis
  Oost, J. van der (2002)
  Natuur en Techniek . - p. 66 - 68.

Patent

2019

• Enrichment of nucleic acids
  Bau, Haim ; Song, Jinzhao ; Liu, Changchun ; Mauk, Michael ; Oost, J. van der; Hegge, J.W. (2019)
  Octrooinummer: WO2019178346, verleend: 2019-09-19.

• Thermostable Cas9 nucleases with reduced off-target activity
  Oost, J. van der; Kranenburg, R. van; Bosma, E.F. ; Mougiakos, I. ; Mohanraju, P. (2019)
  Octrooinummer: WO2019072596, verleend: 2019-04-18.

2018

• Alcohol acetyl transferases for alkyl alkanoate production
  Kruis, A.J. ; Levisson, M. ; Mars, A.E. ; Kengen, S.W.M. ; Oost, J. van der; Sanders, J.P.M. ; Weusthuis, R.A. (2018)
  Octrooinummer: WO2018099719, verleend: 2018-06-08.

• Thermostable Cas9 nucleases
  Oost, J. van der; Kranenburg, R. van; Bosma, E.F. ; Mougiakos, I. ; Mohanraju, P. (2018)
  Octrooinummer: WO2018108339, verleend: 2018-06-21.

• Thermostable Cas9 nucleases
  Oost, J. van der; Kranenburg, R. van; Bosma, E.F. ; Mougiakos, I. ; Mohanraju, P. (2018)
  Octrooinummer: WO2018109101, verleend: 2018-06-21.

• Microbial genome editing
  Oost, J. van der; Kranenburg, R. van; Bosma, E.F. ; Mougiakos, I. (2018)
  Octrooinummer: WO2018083128, verleend: 2018-05-11.

• Prokaryotic argonaute proteins and uses thereof
  Oost, J. van der; Hegge, J.W. (2018)
  Octrooinummer: WO2018011236, verleend: 2018-01-18.

2017

• Improved CRISPR-Cas9 genome editing tool
  Louwen, Rogier ; Oost, J. van der (2017)
  Octrooinummer: WO2017155408, verleend: 2017-09-14.

• Improved CRISPR-Cpf1 genome editing tool
  Oost, J. van der; Baarlen, P. van; Louwen, Rogier (2017)
  Octrooinummer: WO2017155407, verleend: 2017-09-14.

2016

• Riboswitch inducible gene expression
  Creutzburg, S.C.A. ; Oost, J. van der (2016)
  Octrooinummer: WO2016166310, verleend: 2016-10-20.

• Riboswitch-controlled screening and selection of desired biocatalysts
  Creutzburg, S.C.A. ; Oost, J. van der (2016)
  Octrooinummer: WO2016166303, verleend: 2016-10-20.

• Thermostable Cas9 nucleases
  Oost, J. van der; Daas, M.J.A. ; Kengen, S.W.M. ; Vos, W.M. de (2016)
  Octrooinummer: WO2016198361, verleend: 2016-12-15.

• Nuclease-mediated genome editing
  Oost, J. van der (2016)
  Octrooinummer: WO2016166340, verleend: 2016-10-20.

2015

• Systematic optimization of coding sequence for functional protein expression
  Oost, J. van der (2015)
  Octrooinummer: WO2015048989, verleend: 2015-04-09.

2014

• DNA-guided DNA interference by a prokaryotic Argonaute
  Oost, J. van der; Swarts, D.C. (2014)
  Octrooinummer: WO2014189628, verleend: 2014-11-27.

• Genetically engineered micro-organisms for production of fatty acids
  Weusthuis, R.A. ; Oost, J. van der; Eggink, G. (2014)
  Octrooinummer: WO2014016328, verleend: 2014-01-30.

2013

• Modified cascade ribonucleoproteins and uses thereof
  Brouns, S.J.J. ; Oost, J. van der (2013)
  Octrooinummer: WO2013098244, verleend: 2013-07-04.

2012

• Process for polylactic acid production using Monascus
  Weusthuis, R.A. ; Wolbert, E.J.H. ; Springer, J. ; Oost, J. van der; Eggink, G. (2012)
  Octrooinummer: WO2012055997, verleend: 2012-05-03.

• Use of Monascus in organic acid production
  Weusthuis, R.A. ; Wolbert, E.J.H. ; Springer, J. ; Oost, J. van der; Eggink, G. (2012)
  Octrooinummer: WO2012055998, verleend: 2012-05-03.

1996

• Thermostabiel (poly)peptide met endoglucanase-activiteit, nucleotide sequentie die daarvoor codeert en toepassing daarvan.
  Oost, J. van der; Vos, W.M. de (1996)
  Octrooinummer: 1003247, verleend: 1996-05-31.

Inaugural speech

2006

• Revolutie in de Evolutie
  Oost, J. van der (2006)
  Wageningen : Wageningen Universiteit,

Abstract

1996

• Genetic and biochemical characterization of two distinct alcohol dehydrogenases from Pyrococcus furiosus.
  Oost, J. van der; Voorhorst, W.G.B. ; Wittenhorst, V. ; Vos, W.M. de (1996)
  In: Abstracts of the Thermophiles 96. Athens, USA (1996) 158. Also: Abstracts 1st Int. Congr. on Extremophiles. Estoril, Portugal - p. 104 - 104.

• Molecular characterization of an endoglucanase from Pyrococcus furiosus.
  Oost, J. van der; Gueguen, Y. ; Voorhorst, W.G.B. ; Vos, W.M. de (1996)
  In: Abstracts 1st Int. Congr. on Extremophiles, Estoril, Portugal - p. 75 - 75.

• Molecular characterization of the tungsten-containing glyceraldehyde-3-phosphate:ferredoxin oxidoreductase from Pyrococcus furiosus.
  Schut, G. ; Oost, J. van der; Kengen, S.W.M. ; Vos, W.M. de (1996)
  In: Abstracts 1st Int. Congr. on Extremophiles, Estoril, Portugal - p. 101 - 101.

Remaining Output

2019

• Haarfijn gewassen verbeteren
  Oost, J. van der (2019)
  Wageningen : Wageningen University & Research,

2017

• Structural basis for guide RNA processing and seed-dependent DNA targeting and cleavage by CRISPR-Cas12a
  Swarts, Daan C. ; Oost, J. van der; Jinek, Martin (2017)

• Monascus ruber as cell factory for lactic acid production at low pH
  Weusthuis, R.A. ; Mars, A.E. ; Springer, J. ; Wolbert, E.J.H. ; Wal, H. van der; Vrije, G.J. de; Levisson, M. ; Leprince, A. ; Houweling-Tan, G.B.N. ; Moers, A.P.H.A. ; Hendriks, S.N.A. ; Mendes, O. ; Griekspoor, Y. ; Werten, M.W.T. ; Schaap, P.J. ; Oost, J. van der; Eggink, G. (2017)

2015

• Effects of Argonaute on gene expression in Thermus thermophilus
  Swarts, D.C. ; Koehorst, J.J. ; Westra, E.R. ; Schaap, P.J. ; Oost, J. van der (2015)

2014

• RNA-targeting by the Type III-A CRISPR-Cas complex of Thermus thermophilus
  Staals, R.H.J. ; Zhu, Y. ; Taylor, D.W. ; Kornfeld, J.E. ; Sharma, K. ; Barendregt, A. ; Koehorst, J.J. ; Vlot, M. ; Neupane, N. ; Varossieau, K. ; Sakamoto, K. ; Suzuki, T. ; Schaap, P.J. ; Urlaub, H. ; Heck, A.J.R. ; Nogales, E. ; Doudna, J.A. ; Shinkai, A. ; Oost, J. van der (2014)

• Thermus thermophilus HB27 WT vs HB27Δago RNAseq
  Swarts, Daan ; Westra, Edze ; Oost, John van der (2014)

2011

• Microben, Zeebonken en Scheepvaartarcheologie - Ode aan het micro-organisme (Interview voor Radio 1 Labyrint)
  Kengen, S.W.M. ; Oost, J. van der; Plugge, C.M. ; Smidt, H. ; Stams, A.J.M. (2011)
  VPRO : VPRO,

2010

• 'Zoeken naar Leven' (Labyrint twittersessie met Prof. Dr. John van der Oost)
  Oost, J. van der (2010)
  Labyrint - W24.nl,