Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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Record number 335206
Title Development of a single nucleotide polymorphism map of porcine chromosome 2
Author(s) Jungerius, B.J.; Rattink, A.P.; Crooijmans, R.P.M.A.; Poel, J.J. van der; Oost, B.A. van; Pas, M.F.W. te; Groenen, M.A.M.
Source Animal Genetics 34 (2003)6. - ISSN 0268-9146 - p. 429 - 437.
DOI https://doi.org/10.1046/j.0268-9146.2003.01056.x
Department(s) Animal Breeding and Genomics
ID - Dier en Omgeving
WIAS
Publication type Refereed Article in a scientific journal
Publication year 2003
Keyword(s) dna-sequence diversity - human genome - sus scrofa - pigs - identification - discovery - genes - loci
Abstract Single nucleotide polymorphism markers are developed on SSC2, predominantly on the p-arm. Several studies reported a quantitative trait loci (QTL) for backfat thickness in this region. Single nucleotide polymorphisms were identified by comparative re-sequencing of polymerase chain reaction (PCR) products from a panel of eight individuals. The panel consisted of five Large Whites (each from a different Dutch breeding company), a Meishan, a Pietrain and a Wild Boar. In total, 67 different PCR products were sequenced and 301 SNPs were identified in 32 429 bp of consensus sequence, an average of one SNP in every 108 bp. After correction for sample size, this polymorphism rate corresponds to a heterozygosity value of one SNP in every 357 bp. For 63% of the SNPs, there was variation among the five Large Whites, and these SNPs are relevant for linkage and association studies in commercial populations. Comparing the Whites with other breeds revealed higher variation rates with: (i) Meishan, 89%; (ii) Pietrain, 69%; (iii) Wild Boar, 70%. Because many of the experimental populations to identify QTL are based on crosses between these breeds, these SNPs are relevant for the fine mapping of the QTL identified within these crosses.
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