Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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    Participatory appraisal of institutional and political constraints and opportunities for innovation to address parasitic weeds in rice
    Schut, M. ; Rodenburg, J. ; Klerkx, L.W.A. ; Hinnou, L.C. ; Kayeke, J. ; Bastiaans, L. - \ 2015
    Crop Protection 74 (2015). - ISSN 0261-2194 - p. 158 - 170.
    fed lowland rice - striga-hermonthica control - raais rapid appraisal - sub-saharan africa - socioeconomic constraints - integrated analysis - pest-management - systems - benin - tanzania
    Parasitic weeds in smallholder rice production systems, of which Striga asiatica, Striga hermonthica and hamphicarpa fistulosa are the main representatives, form an increasing problem for food and income security in sub-Saharan Africa (SSA). The objective of this paper is to identify institutional and political constraints and opportunities for innovation to address parasitic weed problems in rice. Constraints and opportunities for innovation were studied across three nested systems: the parasitic weed control system, the crop protection system, and the agricultural system. Multi-stakeholder workshops, interviews and surveys were held to gather data on key constraints faced by different stakeholder groups across three parasitic weed infested study sites in both Tanzania and Benin. The results demonstrate that in both countries, the majority of institutional and political constraints relate to the functioning of the broader crop protection and agricultural systems and not specifically to parasitic weeds. Although differences were observed between the two countries and the different stakeholder groups, the majority of constraints perceived by the stakeholders were caused by a lack of capabilities and resources and a limited access to credit. Awareness raising of parasitic weed problems among farmers, extension and crop protection officers at the local level, combined with improved input and service supply and enhanced agricultural education and training curricula at the national level, were identified as important elements for improvement. More structural collaboration between key stakeholder groups is expected to contribute to a better recognition of agricultural problems, like that of parasitic weeds in rice, and a more timely identification of feasible solutions.
    Rhamphicarpa fistulosa, a widespread facultative hemi-parasitic weed, threatening rice production in Africa
    Rodenburg, J. ; Morawetz, J.J. ; Bastiaans, L. - \ 2015
    Weed Research 55 (2015). - ISSN 0043-1737 - p. 118 - 131.
    sub-saharan africa - fed lowland rice - phylogenetic-relationships - rhinanthus-minor - scrophulariaceae - vegetation - orobanchaceae - management - haustoria - habitats
    Rhamphicarpa fistulosa is a facultative hemi-parasitic plant of the Orobanchaceae family, adapted to wet soils. Apart from tropical Australia, it is only found in sub-Saharan Africa, where it is considered a minor weed in cereal crops such as rice. Due to this status, the species has received only sporadic attention. Recent field observations and encounters with rice farmers in several African countries showed that R. fistulosa is, however, a more serious and increasing production constraint than previously thought. Results from a systematic literature review and a global herbarium study support this. The species has a broad distribution over Africa (at least 35 countries from Madagascar to Senegal and from Sudan to South Africa) and a wide range in altitude (0–2150 m a.s.l.) and environment (waterlogged swamps to moist free-draining uplands). Rhamphicarpa fistulosa is relatively independent and persistent because of the presumably wide host range, the facultative nature of its parasitism and its prolific seed (estimated 100 000 seeds m-2 under moderate infestation levels). Finally, R. fistulosa causes severe yield losses (average 60%) and high regional annual economic losses (estimated US $175 million), while effective control options are scant and awareness of the species among important R&D stakeholders is almost absent. An integrated approach is advocated to assist the rice sector to reduce current R. fistulosa-inflicted losses and to prevent further spread of the species into new areas.
    RAAIS: Rapid Appraisal of Agricultural Innovation Systems (Part I). A diagnostic tool for integrated analysis of complex problems and innovation capacity
    Schut, M. ; Klerkx, L.W.A. ; Rodenburg, J. ; Kayeke, J. ; Hinnou, L.C. ; Raboanarielina, C.M. ; Adegbola, P.Y. ; Ast, A. van; Bastiaans, L. - \ 2015
    Agricultural Systems 132 (2015). - ISSN 0308-521X - p. 1 - 11.
    sub-saharan africa - fed lowland rice - framework - policy - perspective - benin - participation - information - reflection - management
    This paper introduces Rapid Appraisal of Agricultural Innovation Systems (RAAIS). RAAIS is a diagnostic tool that can guide the analysis of complex agricultural problems and innovation capacity of the agricultural system in which the complex agricultural problem is embedded. RAAIS focuses on the integrated analysis of different dimensions of problems (e.g. biophysical, technological, socio-cultural, economic, institutional and political), interactions across different levels (e.g. national, regional, local), and the constraints and interests of different stakeholder groups (farmers, government, researchers, etc.). Innovation capacity in the agricultural system is studied by analysing (1) constraints within the institutional, sectoral and technological subsystems of the agricultural system, and (2) the existence and performance of the agricultural innovation support system. RAAIS combines multiple qualitative and quantitative methods, and insider (stakeholders) and outsider (researchers) analyses which allow for critical triangulation and validation of the gathered data. Such an analysis can provide specific entry points for innovations to address the complex agricultural problem under study, and generic entry points for innovation related to strengthening the innovation capacity of agricultural system and the functioning of the agricultural innovation support system. The application of RAAIS to analyse parasitic weed problems in the rice sector, conducted in Tanzania and Benin, demonstrates the potential of the diagnostic tool and provides recommendations for its further development and use.
    RAAIS: Rapid Appraisal of Agricultural Innovation Systems (Part II). Integrated analysis of parasitic weed problems in rice in Tanzania
    Schut, M. ; Rodenburg, J. ; Klerkx, L.W.A. ; Kayeke, J. ; Ast, A. van; Bastiaans, L. - \ 2015
    Agricultural Systems 132 (2015). - ISSN 0308-521X - p. 12 - 24.
    sub-saharan africa - fed lowland rice - west-africa - management - framework - policy - determinants - networks - science - design
    Parasitic weeds such as Striga spp and Rhamphicarpa fistulosa in smallholder rice production systems form an increasing problem for food and income security in sub-Saharan Africa. In this paper we implement the Rapid Appraisal of Agricultural Innovation Systems (RAAIS) as a diagnostic tool to identify specific and generic entry points for innovations to address parasitic weeds in rain-fed rice production in Tanzania. Data were gathered across three study sites in Tanzania where parasitic weeds are eminent (Kyela, Songea Rural and Morogoro Rural districts). The results demonstrate that in Tanzania, weeds in general and parasitic weeds in particular receive little attention in agricultural research, training and education curricula. Crop protection policies mainly focus on the control of (insect) pest and diseases and there is relatively little attention for weed prevention, which is essential for addressing parasitic weed problems effectively. Specific entry points for innovation include increasing awareness of parasitic weed problems among farmers, extension and crop protection officers and policymakers. In regions where awareness is relatively high, participatory research approaches can provide a basis for developing locally adapted parasitic weed management strategies. Generic entry points for innovation include enhanced collaboration and interaction between stakeholders across different levels, for example in multi-stakeholder platforms. This can provide the basis for developing and implementing coherent policy and development strategies to address structural constraints in the agricultural system, including the promotion of clean local seed systems, investments in physical and knowledge infrastructure development, adequate backstopping of agricultural extension officers, agribusiness training for farmers, quality control of agricultural inputs, timely access to agricultural inputs, and improved access to markets for farmers. Together the specific and generic entry points can strengthen the innovation capacity of Tanzania's agricultural system to address parasitic weed problems, as well as other complex agricultural problems.
    Correlation between temperature and phenology prediction error in rice (Oryza sativa L.)
    Oort, P.A.J. van; Zhang, T. ; Vries, M.E. de; Heinemann, A.B. ; Meinke, H.B. - \ 2011
    Agricultural and Forest Meteorology 151 (2011)12. - ISSN 0168-1923 - p. 1545 - 1555.
    diverse agro-environments - fed lowland rice - climate-change - irrigated rice - photothermal responses - water temperature - upland rice - spikelet sterility - impact assessment - cool climate
    For rice (Oryza sativa L.), simulation models like ORYZA2000 and CERES-Rice have been used to explore adaptation options to climate change and weather-related stresses (drought, heat). Output of these models is very sensitive to accurate modelling of crop development, i.e. phenology. What has to date received little attention in phenology calibration is the temperature range within which phenological models are accurate. Particularly the possible correlation between temperature and phenology prediction error has received little attention, although there are indications that such correlation exists, in particular in the study by Zhang et al., 2008 T. Zhang, J. Zhu and X. Yang, Non-stationary thermal time accumulation reduces the predictability of climate change effects on agriculture. Agricultural and Forest Meteorology, 148 10 (2008), pp. 1412–1418. Zhang et al. (2008). The implication of such correlation is that a phenology model that is accurate within the calibration temperature range can be less accurate at higher temperatures where it can systematically overestimate or underestimate the duration of the phase from emergence to flowering. We have developed a new rice phenology calibration program that is consistent with ORYZA2000 concepts and coding. The existing calibration program DRATES of ORYZA2000 requires an assumption of default cardinal temperatures (8, 30 and 42 °C) and then calculates cultivar specific temperature sums and development rates. Our new program estimates all phenological parameters simultaneously, including the cardinal temperatures. Applied to nine large datasets from around the world we show that the use of default cardinal temperatures can lead to correlation between temperature and phenology prediction error and temperature and RMSE values in the order of 4–18 days for the period from emergence to flowering. Our new program avoids such correlation and reduces phenology prediction errors to 3–7 days (RMSE). Our results show that the often made assumption of a rapid decrease in development rate above the optimal temperature can lead to poorer predictions and systematic errors. We therefore caution against using default phenological parameters for studies where temperatures may fall outside the range for which the phenological models have been calibrated. In particular, this applies to climate change studies, were this could lead to highly erroneous conclusions. More phenological research with average growing season temperatures above the optimum, in the range of 32–40 °C, is needed to establish which phenological model best describes phenology in this temperature range.
    Adaptation and performance of rice genotypes in tropical and subtropical environments
    Jing, Q. ; Spiertz, J.H.J. ; Hengsdijk, H. ; Keulen, H. van; Cao, W. ; Dai, T. - \ 2010
    NJAS Wageningen Journal of Life Sciences 57 (2010)2. - ISSN 1573-5214 - p. 149 - 157.
    fed lowland rice - irrigated rice - northeast thailand - grain-yield - cropping systems - amylose content - soil fertility - use efficiency - climate-change - nitrogen
    Standardized field experiments were carried out to study the performance of five rice genotypes derived from different germplasm in terms of yield, harvest index (HI) and grain quality at eight agro-ecological sites of the tropics and subtropics across Asia during 2001 and 2002. Considering that indica and javanica genotypes adapt to warm climatic conditions, and japonica genotypes to cool agro-climatic conditions, it is hypothesized that indica × japonica hybrids may combine high yields and good quality traits under a wide range of agro-climatic conditions. Grain yield, HI, protein content and amylose content varied considerably among genotypes and environments. Mean rice yields of genotypes ranged from 1.5 to 11 t ha-1 across the eight sites; on average yields were 7.2 t ha-1 under subtropical and 2.7 t ha-1 under tropical conditions. The much lower yields in tropical environments resulted from a low biomass as well as a low HI. Among the genotypes, the indica × japonica hybrid showed the highest yield under subtropical conditions, and a higher yield than the japonica genotypes and the indica × javanica hybrid but lower than the indica genotype under tropical conditions. Phenology of genotypes varied strongly across environments. Low yields at tropical locations were associated with a low light capture due to short growth duration. Post-anthesis light-use efficiencies and the photothermal quotient explained much of the variation in yield. Protein content varied among genotypes depending on location and year. Variation in amylose content of rice grains was mainly associated with genotypic differences and much less with environmental conditions, but contents decreased with higher post-anthesis ambient temperatures. The indica × japonica hybrid combined high yields with a favourable amylose content and showed a better ability to adapt to cool and to warm agro-climatic conditions than the indica or japonica genotypes. Our study showed the magnitude of yield penalties associated with growing rice genotypes in environments to which they are not adapted. The consequences of these findings for improved adaptation of rice are discussed
    Yield gap of rainfed rice in farmers’ fields in Central Java, Indonesia
    Boling, A.A. ; Tuong, T.P. ; Keulen, H. van; Bouman, B.A.M. ; Suganda, H. ; Spiertz, J.H.J. - \ 2010
    Agricultural Systems 103 (2010)5. - ISSN 0308-521X - p. 307 - 315.
    fed lowland rice - exploring options - soil properties - toposequence - efficiencies - environment - asia
    Yield constraint analysis for rainfed rice at a research station gives insight into the relative role of occurring yield-limiting factors. However, soil nutrient status and water conditions along toposequences in rainfed farmers’ fields may differ from those at the research station. Therefore, yield constraints need to be analyzed in farmers’ fields in order to design management strategies to increase yield and yield stability. We applied production ecological concepts to analyze yield-limiting factors (water, N) on rice yields along toposequences in farmers’ fields using data from on-farm experiments conducted in 2000–2002 in Indonesia. Potential, water-limited, and N-limited yields were simulated using the ORYZA2000 crop growth model. Farmers’ fields showed large spatial and temporal variation in hydrology (354–1235 mm seasonal rainfall, -150 to 50 cm field-water depth) and fertilizer doses (76–166 N, 0–45 P, and 0–51 kg K ha-1). Farmers’ yields ranged from 0.32 to 5.88 Mg ha-1. The range in yield gap caused by water limitations was 0–28% and that caused by N limitations 35–63%, with large temporal and spatial variability. The relative limitations of water and N in farmers’ fields varied strongly among villages in rainfed rice areas and toposequence positions, with yield gaps due to water and N at the top and upper middle positions higher than at the lower middle and bottom toposequence positions, and yield gaps in late wet seasons higher than those in early wet seasons. Management options (e.g. crop establishment dates, shortening turnaround time, using varieties with shorter duration, supplemental irrigation) to help the late-season crop escape, or minimize the negative effects of, late-season droughts and supplying adequate N-fertilizer are important for increasing yield in rainfed lowland rice in Indonesia. More N-fertilizer should be given to upper toposequence positions than to lower positions because the former had a lower indigenous nutrient supply and hence a better response to N-fertilizer inputs. Systems approaches using production ecological concepts can be applied in yield constraint analysis for indentifying management strategies to increase yield and yield stability in farmers’ fields in other rainfed lowland areas.
    Underwater photosynthesis in flooded terrestrial plants: a matter of leaf plasticity
    Mommer, L. ; Visser, E.J.W. - \ 2005
    Annals of Botany 96 (2005)4. - ISSN 0305-7364 - p. 581 - 589.
    radial oxygen loss - limestone lakes turloughs - eelgrass zostera-marina - fresh-water macrophytes - aquatic vascular plants - fed lowland rice - abscisic-acid - hydrilla-verticillata - environmental variables - submergence tolerance
    • Background Flooding causes substantial stress for terrestrial plants, particularly if the floodwater completely submerges the shoot. The main problems during submergence are shortage of oxygen due to the slow diffusion rates of gases in water, and depletion of carbohydrates, which is the substrate for respiration. These two factors together lead to loss of biomass and eventually death of the submerged plants. Although conditions under water are unfavourable with respect to light and carbon dioxide supply, photosynthesis may provide both oxygen and carbohydrates, resulting in continuation of aerobic respiration. • Scope This review focuses on evidence in the literature that photosynthesis contributes to survival of terrestrial plants during complete submergence. Furthermore, we discuss relevant morphological and physiological responses of the shoot of terrestrial plant species that enable the positive effects of light on underwater plant performance. • Conclusions Light increases the survival of terrestrial plants under water, indicating that photosynthesis commonly occurs under these submerged conditions. Such underwater photosynthesis increases both internal oxygen concentrations and carbohydrate contents, compared with plants submerged in the dark, and thereby alleviates the adverse effects of flooding. Additionally, several terrestrial species show high plasticity with respect to their leaf development. In a number of species, leaf morphology changes in response to submergence, probably to facilitate underwater gas exchange. Such increased gas exchange may result in higher assimilation rates, and lower carbon dioxide compensation points under water, which is particularly important at the low carbon dioxide concentrations observed in the field. As a result of higher internal carbon dioxide concentrations in submergence-acclimated plants, underwater photorespiration rates are expected to be lower than in non-acclimated plants. Furthermore, the regulatory mechanisms that induce the switch from terrestrial to submergence-acclimated leaves may be controlled by the same pathways as described for heterophyllous aquatic plants.
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