Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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    A Mixed Modeling Approach to Predict the Effect of Environmental Modification on Species Distributions
    Cozzoli, F. ; Eelkema, M. ; Bouma, T.J. ; Ysebaert, T. ; Escaravage, V. ; Herman, P.M.J. - \ 2014
    PLoS ONE 9 (2014)2. - ISSN 1932-6203
    cockles cerastoderma-edule - natural animal assemblages - quantile regression - lanice-conchilega - body-size - ecosystem engineers - sediment transport - hydrobia-ulvae - abundance - oosterschelde
    Human infrastructures can modify ecosystems, thereby affecting the occurrence and spatial distribution of organisms, as well as ecosystem functionality. Sustainable development requires the ability to predict responses of species to anthropogenic pressures. We investigated the large scale, long term effect of important human alterations of benthic habitats with an integrated approach combining engineering and ecological modelling. We focused our analysis on the Oosterschelde basin (The Netherlands), which was partially embanked by a storm surge barrier (Oosterscheldekering, 1986). We made use of 1) a prognostic (numerical) environmental (hydrodynamic) model and 2) a novel application of quantile regression to Species Distribution Modeling (SDM) to simulate both the realized and potential (habitat suitability) abundance of four macrozoobenthic species: Scoloplos armiger, Peringia ulvae, Cerastoderma edule and Lanice conchilega. The analysis shows that part of the fluctuations in macrozoobenthic biomass stocks during the last decades is related to the effect of the coastal defense infrastructures on the basin morphology and hydrodynamics. The methodological framework we propose is particularly suitable for the analysis of large abundance datasets combined with high-resolution environmental data. Our analysis provides useful information on future changes in ecosystem functionality induced by human activities.
    MacroBen integrated database on benthic invertebrates of European continental shelves: a tool for large-scale analysis across Europe
    Vanden Berghe, E. ; Claus, S. ; Appeltans, W. ; Faulwetter, S. ; Craeymeersch, J.A.M. - \ 2009
    Marine Ecology Progress Series 382 (2009). - ISSN 0171-8630 - p. 225 - 238.
    biogeographic information-system - western mediterranean sea - marine biotic index - abra-alba community - taxonomic distinctness - bottom assemblages - lanice-conchilega - gialova lagoon - ionian sea - black-sea
    We describe an integrated database on European macrobenthic fauna, developed within the framework of the European Network of Excellence MarBEF, and the data and data integration exercise that provided its content. A total of 44 datasets including 465 354 distribution records from soft-bottom macrobenthic species were uploaded into the relational MacroBen database, corresponding to 22 897 sampled stations from all European seas, and 7203 valid taxa. All taxonomic names were linked to the European Register of Marine Species, which was used as the taxonomic reference to standardise spelling and harmonise synonymy. An interface was created, allowing the user to explore, subselect, export and analyse the data by calculating different indices. Although the sampling techniques and intended use of the datasets varied tremendously, the integrated database proved to be robust, and an important tool for studying and understanding large-scale long-term distributions and abundances of marine benthic life. Crucial in the process was the willingness and the positive data-sharing attitude of the different data contributors. Development of a data policy that is highly aware of sensitivities and ownership issues of data providers was essential in the creation of this goodwill.
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