Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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    Exposing the grey seal as a major predator of harbour porpoises
    Leopold, M.F. ; Begeman, L. ; Bleijswijk, J. van; IJsseldijk, L. ; Witte, H.J. ; Grone, A. - \ 2015
    Proceedings of the Royal Society. B: Biological Sciences 282 (2015)1798. - ISSN 0962-8452 - 7 p.
    halichoerus-grypus - phocoena-phocoena - natural mortality - escape tactics - southern gulf - st-lawrence - risk - dna
    Harbour porpoises (Phocoena phocoena) stranding in large numbers around the southern North Sea with fatal, sharp-edged mutilations have spurred controversy among scientists, the fishing industry and conservationists, whose views about the likely cause differ. The recent detection of grey seal (Halichoerus grypus) DNA in bite marks on three mutilated harbour porpoises, as well as direct observations of grey seal attacks on porpoises, have identified this seal species as a probable cause. Bite mark characteristics were assessed in a retrospective analysis of photographs of dead harbour porpoises that stranded between 2003 and 2013 (n = 1081) on the Dutch coastline. There were 271 animals that were sufficiently fresh to allow macroscopic assessment of grey seal-associated wounds with certainty. In 25% of these, bite and claw marks were identified that were consistent with the marks found on animals that had tested positive for grey seal DNA. Affected animals were mostly healthy juveniles that had a thick blubber layer and had recently fed. We conclude that the majority of the mutilated harbour porpoises were victims of grey seal attacks and that predation by this species is one of the main causes of death in harbour porpoises in The Netherlands. We provide a decision tree that will help in the identification of future cases of grey seal predation on porpoises.
    Simulation testing the robustness of stock assessement models to error: some results from the ICES strategic initiative on stock assessment methods
    Deroba, J.J. ; Butterworth, D.S. ; Methot, R.D. ; Dickey-Collas, M. ; Miller, D.C.M. ; Hintzen, N.T. - \ 2015
    ICES Journal of Marine Science 72 (2015)1. - ISSN 1054-3139 - p. 19 - 30.
    at-age analysis - management procedures - natural mortality - performance - uncertainty - fishery
    The World Conference on Stock Assessment Methods (July 2013) included a workshop on testing assessment methods through simulations. The exercise was made up of two steps applied to datasets from 14 representative fish stocks from around the world. Step 1 involved applying stock assessments to datasets with varying degrees of effort dedicated to optimizing fit. Step 2 was applied to a subset of the stocks and involved characteristics of given model fits being used to generate pseudo-data with error. These pseudo-data were then provided to assessment modellers and fits to the pseudo-data provided consistency checks within (self-tests) and among (cross-tests) assessment models. Although trends in biomass were often similar across models, the scaling of absolute biomass was not consistent across models. Similar types of models tended to perform similarly (e.g. age based or production models). Self-testing and cross-testing of models are a useful diagnostic approach, and suggested that estimates in the most recent years of time-series were the least robust. Results from the simulation exercise provide a basis for guidance on future large-scale simulation experiments and demonstrate the need for strategic investments in the evaluation and development of stock assessment methods.
    Economic repercussions of fisheries-induced evolution
    Eikeset, A.M. ; Richter, A.P. ; Dunlop, E.S. ; Dieckmann, U. ; Stenseth, N.C. - \ 2013
    Proceedings of the National Academy of Sciences of the United States of America 110 (2013)30. - ISSN 0027-8424 - p. 12259 - 12264.
    northeast arctic cod - life-history evolution - natural mortality - reference points - gadus-morhua - fish stocks - consequences - population - management - size
    Fish stocks experiencing high fishing mortality show a tendency to mature earlier and at a smaller size, which may have a genetic component and therefore long-lasting economic and biological effects. To date, the economic effects of such ecoevolutionary dynamics have not been empirically investigated. Using 70 y of data, we develop a bioeconomic model for Northeast Arctic cod to compare the economic yield in a model in which life-history traits can vary only through phenotypic plasticity with a model in which, in addition, genetic changes can occur. We find that evolutionary changes toward faster growth and earlier maturation occur consistently even if a stock is optimally managed. However, if a stock is managed optimally, the evolutionary changes actually increase economic yield because faster growth and earlier maturation raise the stock’s productivity. The optimal fishing mortality is almost identical for the evolutionary and nonevolutionary model and substantially lower than what it has been historically. Therefore, the costs of ignoring evolution under optimal management regimes are negligible. However, if fishing mortality is as high as it has been historically, evolutionary changes may result in economic losses, but only if the fishery is selecting for medium-sized individuals. Because evolution facilitates growth, the fish are younger and still immature when they are susceptible to getting caught, which outweighs the increase in productivity due to fish spawning at an earlier age.
    Can fisheries-induced evolution shift reference points for fisheries management?
    Heino, M. ; Baulier, L. ; Boukal, D.S. ; Mollet, F.M. ; Rijnsdorp, A.D. - \ 2013
    ICES Journal of Marine Science 70 (2013)4. - ISSN 1054-3139 - p. 707 - 721.
    cod gadus-morhua - north-sea plaice - life-history evolution - exploited fish stocks - pleuronectes-platessa l - eco-genetic model - atlantic cod - population-dynamics - reproductive investment - natural mortality
    Biological reference points are important tools for fisheries management. Reference points are not static, but may change when a population's environment or the population itself changes. Fisheries-induced evolution is one mechanism that can alter population characteristics, leading to “shifting” reference points by modifying the underlying biological processes or by changing the perception of a fishery system. The former causes changes in “true” reference points, whereas the latter is caused by changes in the yardsticks used to quantify a system's status. Unaccounted shifts of either kind imply that reference points gradually lose their intended meaning. This can lead to increased precaution, which is safe, but potentially costly. Shifts can also occur in more perilous directions, such that actual risks are greater than anticipated. Our qualitative analysis suggests that all commonly used reference points are susceptible to shifting through fisheries-induced evolution, including the limit and “precautionary” reference points for spawning-stock biomass, Blim and Bpa, and the target reference point for fishing mortality, F0.1. Our findings call for increased awareness of fisheries-induced changes and highlight the value of always basing reference points on adequately updated information, to capture all changes in the biological processes that drive fish population dynamics.
    Estimating stock parameters from trawl cpue-at-age series using year-class curves
    Cotter, A.J.R. ; Mesnil, B. ; Piet, G.J. - \ 2007
    ICES Journal of Marine Science 64 (2007)2. - ISSN 1054-3139 - p. 234 - 247.
    north-sea - fishing mortality - natural mortality - catch
    A year-class curve is a plot of log cpue (catch per unit effort) over age for a single year class of a species (in contrast to the better known catch curve, fitted to multiple year classes at one time). When linear, the intercept and slope estimate the log cpue at age 0 and the average rate of total mortality, Z, respectively. Here, we suggest methodological refinements within a linear least squares framework. Candidate models may include a selectivity term, fleet-specific parameters, and polynomials in year to allow for gradual variations of Z. An iterative weighting method allows for differing precisions among the different fleets, and a forward (one-step ahead) validation procedure tests predicted cpue against observed values. Choice of the best approximating model(s) is made by ranking the biological credibility of each candidate model, then by comparing graphic plots, precision of prediction, and the Akaike Information Criterion. Two example analyses are (i) a comparison of estimated and true results for five stock simulations carried out by the US National Research Council, and (ii) modelling three beam trawl surveys for plaice (Pleuronectes platessa) in the North Sea. Results were consistent with known, age-related, offshore migrations by plaice. Year-class curves are commended as a widely applicable, statistically based, visual, and robust method
    Simulation of Nile tilapia (Oreochromis niloticus niloticus L.) culture in ponds, through individual-based modelling, using a population dynamic approach
    Graaf, G.J. de; Dekker, P.J. ; Huisman, E.A. ; Verreth, J.A.J. - \ 2005
    Aquaculture Research 36 (2005)5. - ISSN 1355-557X - p. 455 - 471.
    gariepinus burchell 1822 - natural mortality - african-catfish - growth - fish - aquaculture - biology
    A simulation model for the production of the Nile tilapia (Oreochromis niloticus niloticus L.) for mixed- or mono-sex culture and for poly-culture with the African catfish (Clarias gariepinus Burchell 1822) or African snakehead (Parachanna obscura Günther 1861) is presented. The model is based on an exponential decay model used in population dynamics and follows an individual-based approach. The model consists of a tilapia sub-model representing population dynamics, growth and recruitment and a predator sub-model representing the predation process and population dynamics and growth of the used predator. The model was calibrated with data on mixed- or mono-sex culture of Nile tilapia and for poly-culture with the African catfish or African snakehead obtained in Congo Brazzaville and validated with similar data from the Philippines, Thailand and the Ivory Coast. The model visualized major underlying processes in tilapia farming and aspects for further improvement of the model; growth is one of the most sensitive input parameters and should be quantitatively related to feeding level and feed quality; length at first maturity and quantification of the recruitment of Nile tilapia has a relatively large influence and recruitment should be related to the length of the females; prey¿predator relations are too coarse and should be more fine-tuned with the relation between prey size and predator size. Incorporation of these features would provide the basis of a model that can serve as a predictive and decision-making support tool
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