Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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    ATLANTIC BIRD TRAITS: a data set of bird morphological traits from the Atlantic forests of South America
    Rodrigues, Rodolpho Credo ; Hasui, Érica ; Assis, Julia Camara ; Pena, João Carlos Castro ; Muylaert, Renata L. ; Tonetti, Vinicius Rodrigues ; Martello, Felipe ; Regolin, André Luis ; Vernaschi Vieira da Costa, Thiago ; Pichorim, Mauro ; Carrano, Eduardo ; Lopes, Leonardo Esteves ; Vasconcelos, Marcelo Ferreira de; Fontana, Carla Suertegaray ; Roos, Andrei Langeloh ; Gonçalves, Fernando ; Banks-Leite, Cristina ; Cavarzere, Vagner ; Efe, Marcio Amorim ; Alves, Maria Alice S. ; Uezu, Alexandre ; Metzger, Jean Paul ; Tarso Zuquim de Antas, Paulo de; Paschoaletto Micchi de Barros Ferraz, Katia Maria de; Calsavara, Larissa Corsini ; Bispo, Arthur Angelo ; Araujo, Helder F.P. ; Duca, Charles ; Piratelli, Augusto João ; Naka, Luciano N. ; Dias, Rafael Antunes ; Gatto, Cassiano A.F.R. ; Villegas Vallejos, Marcelo Alejandro ; Reis Menezes, Gregório dos; Bugoni, Leandro ; Rajão, Henrique ; Zocche, Jairo José ; Willrich, Guilherme ; Silva, Elsimar Silveira da; Manica, Lilian Tonelli ; Camargo Guaraldo, André de; Althmann, Giulyana ; Serafini, Patricia Pereira ; Francisco, Mercival Roberto ; Lugarini, Camile ; Machado, Caio Graco ; Marques-Santos, Fernando ; Bobato, Rafaela ; Souza, Elivan Arantes de; Donatelli, Reginaldo José ; Ferreira, Carolina Demetrio ; Morante-Filho, José Carlos ; Paes-Macarrão, Natalia Dantas ; Macarrão, Arthur ; Lima, Marcos Robalinho ; Jacoboski, Lucilene Inês ; Candia-Gallardo, Carlos ; Alegre, Vanesa Bejarano ; Jahn, Alex E. ; Camargo Barbosa, Karlla Vanessa de; Cestari, Cesar ; Silva, José Nilton da; Silveira, Natalia Stefanini da; Vara Crestani, Ana Cristina ; Petronetto, Adeliane Peterle ; Abreu Bovo, Alex Augusto ; Viana, Anderson Durão ; Araujo, Andrea Cardoso ; Santos, Andressa Hartuiq dos; Araújo do Amaral, Andreza Clarinda ; Ferreira, Ariane ; Vieira-Filho, Arnaldo Honorato ; Ribeiro, Bianca Costa ; Missagia, Caio C.C. ; Bosenbecker, Camila ; Bronzato Medolago, Cesar Augusto ; Rodriguez Espínola, Cid Rodrigo ; Faxina, Claudenice ; Campodonio Nunes, Cristiane Estrela ; Prates, Cristine ; Apolinario da Luz, Daniela Tomasio ; Moreno, Daniele Janina ; Mariz, Daniele ; Faria, Deborah ; Meyer, Douglas ; Doná, Eder Afonso ; Alexandrino, Eduardo Roberto ; Fischer, Erich ; Girardi, Fabiane ; Giese, Felipe Borba ; Santos Shibuya, Felipe Leonardo ; Faria, Fernando Azevedo ; Bittencourt de Farias, Fernando ; Lima Favaro, Fernando de; Ferneda Freitas, Fernando José ; Chaves, Flávia G. ; Guedes Las-Casas, Flor Maria ; Rosa, Gabriel L.M. ; Massaccesi de laTorre, Gabriel ; Bochio, Gabriela Menezes ; Bonetti, Giselle Evelise ; Kohler, Glauco ; Toledo-Lima, Guilherme Santos ; Plucenio, Gustavo Piletti ; Menezes, Ícaro ; Denóbile Torres, Ingrid Maria ; Carvalho Provinciato, Ivan Celso ; Viana, Ivan Réus ; Roper, James Joseph ; Persegona, Jaqueline Evelyn ; Barcik, Jean Júnior ; Martins-Silva, Jimi ; Gava Just, João Paulo ; Tavares-Damasceno, João Paulo ; Almeida Ferreira, João Ricardo de; Rodrigues Rosoni, Jonas Rafael ; Teixeira Falcon, José Eduardo ; Schaedler, Laura Maria ; Mathias, Leonardo Brioschi ; Deconto, Leonardo Rafael ; Cruz Rodrigues, Licléia da; Meyer, Marcela Afonso P. ; Repenning, Márcio ; Melo, Marcos Antônio ; Santos de Carvalho, Maria Amélia ; Rodrigues, Marcos ; Conti Nunes, Maria Flavia ; Ogrzewalska, Maria Halina ; Lopes Gonçalves, Mariana ; Vecchi, Maurício B. ; Bettio, Maurício ; Matta Baptista, Michelle Noronha da; Arantes, Murilo Sérgio ; Ruiz, Nicolás Luciano ; Bisetto de Andrade, Paulo Guilherme ; Lima Ribeiro, Pedro Henrique ; Galetti Junior, Pedro Manoel ; Macario, Phoeve ; Oliveira Fratoni, Rafael de; Meurer, Rafael ; Saint-Clair, Rafael S. ; Romagna, Rafael Spilere ; Alves Lacerda, Raquel Caroline ; Serpa Cerboncini, Ricardo Augusto ; Lyra, Ricardo Brioschi ; Lau, Ricardo ; Rodrigues, Roberta Costa ; Faria, Rogério Rodrigues ; Laps, Rudi Ricardo ; Althoff, Sérgio Luiz ; Jesus, Shayana de; Namba, Sumiko ; Braga, Talita Vieira ; Molin, Tamara ; França Câmara, Thanyria P. ; Enedino, Thayz Rodrigues ; Wischhoff, Uschi ; Oliveira, Vanessa Cristina de; Leandro-Silva, Victor ; Araújo-Lima, Vitor ; Oliveira Lunardi, Vitor de; Gusmão, Reginaldo Farias de; Souza Correia, Jozélia Maria de; Gaspar, Lucas P. ; Batista Fonseca, Renata Cristina ; Fonseca Pires Neto, Paulo Affonso ; Medeiros Morato de Aquino, Ana Carla ; Camargo, Bruna Betagni de; Cezila, Beatriz Azevedo ; Costa, Leonardo Marques ; Paolino, Roberta Montanheiro ; Kanda, Claudia Zukeran ; Monteiro, Erison C.S. ; Oshima, Júlia Emi F. ; Alves-Eigenheer, Milene ; Pizo, Marco Aurelio ; Silveira, Luís F. ; Galetti, Mauro ; Ribeiro, Milton Cezar - \ 2019
    Ecology 100 (2019)6. - ISSN 0012-9658
    body size - functional diversity - individual variation - interspecific variation - phenotypic plasticity - phylogenetic diversity - rapid evolution - tropical forest

    Scientists have long been trying to understand why the Neotropical region holds the highest diversity of birds on Earth. Recently, there has been increased interest in morphological variation between and within species, and in how climate, topography, and anthropogenic pressures may explain and affect phenotypic variation. Because morphological data are not always available for many species at the local or regional scale, we are limited in our understanding of intra- and interspecies spatial morphological variation. Here, we present the ATLANTIC BIRD TRAITS, a data set that includes measurements of up to 44 morphological traits in 67,197 bird records from 2,790 populations distributed throughout the Atlantic forests of South America. This data set comprises information, compiled over two centuries (1820–2018), for 711 bird species, which represent 80% of all known bird diversity in the Atlantic Forest. Among the most commonly reported traits are sex (n = 65,717), age (n = 63,852), body mass (n = 58,768), flight molt presence (n = 44,941), molt presence (n = 44,847), body molt presence (n = 44,606), tail length (n = 43,005), reproductive stage (n = 42,588), bill length (n = 37,409), body length (n = 28,394), right wing length (n = 21,950), tarsus length (n = 20,342), and wing length (n = 18,071). The most frequently recorded species are Chiroxiphia caudata (n = 1,837), Turdus albicollis (n = 1,658), Trichothraupis melanops (n = 1,468), Turdus leucomelas (n = 1,436), and Basileuterus culicivorus (n = 1,384). The species recorded in the greatest number of sampling localities are Basileuterus culicivorus (n = 243), Trichothraupis melanops (n = 242), Chiroxiphia caudata (n = 210), Platyrinchus mystaceus (n = 208), and Turdus rufiventris (n = 191). ATLANTIC BIRD TRAITS (ABT) is the most comprehensive data set on measurements of bird morphological traits found in a biodiversity hotspot; it provides data for basic and applied research at multiple scales, from individual to community, and from the local to the macroecological perspectives. No copyright or proprietary restrictions are associated with the use of this data set. Please cite this data paper when the data are used in publications or teaching and educational activities.

    Consistent phenological shifts in the making of biodiversity hotspots: the Cape flora.
    Warren, B. ; Bakker, F.T. ; Bellstedt, D.U. ; Bytebier, B. ; Claszen-Bockhoff, R. ; Dreyer, L.L. ; Edwards, A. ; Forest, F. ; Galley, C. ; Hardy, C.R. ; Linder, H.P. ; Muasya, A.M. ; Mummenhoff, K. ; Oberlander, K.C. ; Quint, M. ; Richardson, J.E. ; Savolainen, V. ; Schrire, B.D. ; Niet, T. van der; Verboom, G.A. ; Yesson, C. ; Hawkins, J.A. - \ 2011
    BMC Evolutionary Biology 11 (2011). - ISSN 1471-2148 - 11 p.
    climate-change - southern africa - ecological niches - flowering time - heterogeneous environments - evolutionary responses - adaptive radiation - rapid evolution - fossil record - sequence data
    Background The best documented survival responses of organisms to past climate change on short (glacial-interglacial) timescales are distributional shifts. Despite ample evidence on such timescales for local adaptations of populations at specific sites, the long-term impacts of such changes on evolutionary significant units in response to past climatic change have been little documented. Here we use phylogenies to reconstruct changes in distribution and flowering ecology of the Cape flora - South Africa's biodiversity hotspot - through a period of past (Neogene and Quaternary) changes in the seasonality of rainfall over a timescale of several million years. Results Forty-three distributional and phenological shifts consistent with past climatic change occur across the flora, and a comparable number of clades underwent adaptive changes in their flowering phenology (9 clades; half of the clades investigated) as underwent distributional shifts (12 clades; two thirds of the clades investigated). Of extant Cape angiosperm species, 14-41% have been contributed by lineages that show distributional shifts consistent with past climate change, yet a similar proportion (14-55%) arose from lineages that shifted flowering phenology. Conclusions Adaptive changes in ecology at the scale we uncover in the Cape and consistent with past climatic change have not been documented for other floras. Shifts in climate tolerance appear to have been more important in this flora than is currently appreciated, and lineages that underwent such shifts went on to contribute a high proportion of the flora's extant species diversity. That shifts in phenology, on an evolutionary timescale and on such a scale, have not yet been detected for other floras is likely a result of the method used; shifts in flowering phenology cannot be detected in the fossil record.
    Ecological and evolutionary consequences of biological invasions and habitat fragmentation
    Hoffmeister, T.S. ; Vet, L.E.M. ; Biere, A. ; Holsinger, K. ; Filser, J. - \ 2005
    Ecosystems 8 (2005)6. - ISSN 1432-9840 - p. 657 - 667.
    increased competitive ability - population-genetics - landscape ecology - rapid evolution - spatial scales - plant - herbivore - ecosystem - conservation - plasticity
    There is substantial evidence that environmental changes on a landscape level can have dramatic consequences for the species richness and structure of food webs as well as on trophic interactions within such food webs. Thus far, the consequences of environmental change, and particularly the effects of invasive species and the fragmentation and isolation of natural habitats, have most often been studied in a purely ecological context, with the main emphasis on the description of alterations in species abundance and diversity and trophic links within food webs. Here, we argue that the study of evolutionary processes that may be affected by such changes is urgently needed to enhance our understanding of the consequences of environmental change. This requires an approach that treats species as dynamic systems with plastic responses to change rather than as static entities. As such, phenotypic plasticity on an individual level and genotypic change as a population level response should be taken into account when studying the consequences of a changing world. Using a multidisciplinary approach, we report on recent advances in our understanding, identify some major gaps in our current knowledge, and point towards rewarding approaches to enhance our understanding of how environmental change alters trophic interactions and ecosystems.
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