Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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    Physiological responses of rice to increased day and night temperatures
    Shi, Wanju - \ 2017
    Wageningen University. Promotor(en): P.C. Struik, co-promotor(en): X. Yin; K.S.V. Jagadisch. - Wageningen : Wageningen University - ISBN 9789463437110 - 202
    crops - rice - oryza sativa - plant physiology - temperature - crop yield - grain - agronomy - gewassen - rijst - oryza sativa - plantenfysiologie - temperatuur - gewasopbrengst - graan - agronomie

    A more rapid increase in night-time temperature compared with day-time temperature and the increased frequency of heat waves associated with climate change present a serious threat to rice (Oryza sativa L.) production and food security. This thesis aims to understand the impact of high night-time temperature (HNT) and high day-time temperature (HDT) on rice grain yield and grain quality and to examine adaptation strategies to cope with high-temperature stresses.

    Grain yield and quality of a susceptible indica genotype (Gharib) and all tested hybrids, when exposed to HNT in the field, were significantly reduced across seasons, with less average reduction in the dry season than in the wet season, indicating that other environmental factors under field conditions may contribute to impacts of HNT on yield. Among the different yield components, a reduced number of spikelets m−2 significantly contributed to yield loss under HNT followed by the consistently lower single-grain weight across all genotypes, while the impact of the decrease in percentage seed-set was less and season-specific. Lower grain yield and poorer grain quality in susceptible cultivar Gharib were associated with a significant reduction in non-structural carbohydrate translocation after flowering, resulting in reduced grain-filling duration. Increased total nitrogen application did not alleviate the negative impact of HNT. The proposed model approach showed that there were significant differences among cultivars in their changes in source-sink relationships in response to HNT. Given that rice grain yield and quality are challenged by a rise in HDT and HNT, in particular at flowering and during grain filling, differential impacts of HNT and HDT during these critical stages were observed. For the single-grain growth during grain filling, HDT either independently or in combination with HNT exerted greater influences than HNT on the grain filling dynamics, activities of starch metabolism enzymes, temporal starch accumulation patterns, and the process of chalk formation. During flowering, HDT increased spikelet sterility in tested hybrids and hybrids were less tolerant to high temperatures than high-yielding inbred varieties. Moreover, in contrast with HNT, HDT played a dominant role in determining spikelet fertility. Novel observations with a series of snapshots of dynamic fertilization processes demonstrated that disturbances in the pre-fertilization phase were the primary causes for heat-induced spikelet sterility, indicating the effectiveness of employing the early-morning flowering trait for mitigating the impact of heat stress at flowering on rice.

    A comprehensive assessment of agriculture in lowlands of south Brazil: characterization and comparison of current and alternative concepts
    Theisen, Giovani - \ 2017
    Wageningen University. Promotor(en): N.P.R. Anten, co-promotor(en): L. Bastiaans. - Wageningen : Wageningen University - ISBN 9789463436380 - 234
    cropping systems - farming systems - crop management - lowland areas - wetlands - pampas - brazil - intensification - sustainability - productivity - indicators - soil management - rice - flooded rice - oryza sativa - maize - zea mays - glycine max - cover crops - livestock - rotation - mixed farming - seedbed preparation - farm machinery - teeltsystemen - bedrijfssystemen - gewasteelt - laaglandgebieden - wetlands - pampa's - brazilië - intensivering - duurzaamheid (sustainability) - productiviteit - indicatoren - bodembeheer - rijst - natte rijst - oryza sativa - maïs - zea mays - glycine max - dekgewassen - vee - rotatie - gemengde landbouw - zaaibedbereiding - landbouwwerktuigen

    Agriculture in the lowlands of south Brazil is of strategic importance at the national level, since it supplies around 80% of the rice consumed by the Brazilian population. In Rio Grande do Sul, the southernmost state in Brazil, three million hectares of lowlands are ready for grain-based agriculture. Of this area, about half is fallow, partly used for cattle grazing, and irrigated rice is the predominant crop, cultivated annually on 1.1 million ha. The remaining area is used for soybean and other crops. The predominant cropping system is a combination of irrigated rice and cattle. Over the last decades, rice yields have steadily increased, but this rise in yield level has to a large extent been obtained at the expense of a continuously higher use of external inputs. The recent introduction of soybean in rotation with rice has partially improved the system, but in most areas the situation is becoming incompatible with the modern demands for sustainability. This thesis presents a long-term study (2006-2015) of five cropping systems for lowlands. Next to monocrop rice and two rice-soybean rotations conducted in either conventional or minimum tillage, the experiment contained two novel systems based on large ridges, on which soybean and maize were combined with either cover crops or crop-livestock integration in winter. In these last systems, 8-m-wide ridges were built to avoid flooding, thus allowing for diversification of cash crops and the cultivation of cover crops or pastures in winter time, as well as the use of no-tillage. All systems were evaluated at process-level, including soil preparation, seeding, plant nutrition, pest management, irrigation, harvesting, transport and cattle management, as well as regarding their performance for the different dimensions of sustainability, particularly environment, land productivity, economics, energy-use and labour. Next to system assessment, two additional experiments were conducted for the evaluation of two specific technologies for soil management in these areas. Crop livestock integration on the ridge-based system offered the best balance between food production, environmental impact and economics. This system is well suited to be used in fields that are kept fallow, thereby enlarging the agricultural productivity of the lowlands. The additional experiments revealed that a knife-roller can successfully substitute plough-and-harrow for soil preparation after rice harvest, and that germination of weed seeds can be reduced if crop seeding is conducted at a lower speed or using a no-tillage seeder equipped with an improved cutting mechanism. Overall the results show that by using alternative cropping systems that allow for diversification and new methods of field management it is possible to simultaneously attain a larger agricultural production and improved sustainability in the lowlands.

    The role of strigolactones and the fungal microbiome in rice during drought adaptation
    Andreo Jimenez, Beatriz - \ 2017
    Wageningen University. Promotor(en): H.J. Bouwmeester, co-promotor(en): C. Ruyter-Spira. - Wageningen : Wageningen University - ISBN 9789463437028 - 205
    drought resistance - drought - abiotic injuries - rice - oryza sativa - plant-microbe interactions - nutrient uptake - defence mechanisms - hormones - fungi - genes - droogteresistentie - droogte - abiotische beschadigingen - rijst - oryza sativa - plant-microbe interacties - voedingsstoffenopname (planten) - verdedigingsmechanismen - hormonen - schimmels - genen

    Rice is the most important food crop in the world, feeding over half the world’s population. However, rice water use efficiency, defined by units of yield produced per unit of water used, is the lowest of all crops. The aim of this thesis was to study the effect of plant hormones and the root microbiome on drought tolerance in rice. The new plant hormone, strigolactone, was shown to be upregulated under drought and to regulate drought tolerance in interaction with the drought-hormone abscisic acid. Using a large collection of rice genotypes grown in the field, we showed that the composition of the root associated fungal microbiome is determined by the rice genotype and can contribute to drought tolerance.

    Feeding Dar es Salaam: a symbiotic food system perspective
    Wegerif, Marc C.A. - \ 2017
    Wageningen University. Promotor(en): J.S.C. Wiskerke, co-promotor(en): P.G.M. Hebinck. - Wageningen : Wageningen University - ISBN 9789463432061 - 291
    agricultural society - rural society - farmers' markets - food products - agricultural products - supermarkets - rice - grain - tanzania - east africa - agrarische samenleving - plattelandssamenleving - boerenmarkten - voedselproducten - landbouwproducten - supermarkten - rijst - graan - tanzania - oost-afrika

    This thesis is a sociological analysis of the agri-food system that feeds most of the over four and a half million residents of the fast-growing city of Dar es Salaam in Tanzania. It is based on qualitative research that has generated a picture of the food system that supplies the important foods for the majority of residents of the city. The research took an actor orientated approach and started from urban eaters and then followed the food back through retailers, processors and transporters to the primary producers. Methodological lessons are derived from this process in particular the elaboration of the ‘ride-along’ as a research method. Foods followed include maize, rice, potatoes, green vegetables, eggs and milk. Other foods such as beef and chicken have also been touched on especially in relation to marketing and slaughtering operations.

    Instead of dismissing what has been found as ‘informal’ or trying to fit it into structuralist paradigms, from orthodox economic or political economy perspectives, I have applied a grounded theory approach in seeking to understand the core ordering principles and rationality of this system that has shown a remarkable resilience over many years. Of particular interest, especially when looking at the functioning of market places and how new actors enter into the food system, is that more important to the food system than competition are various forms of collaboration.

    This study comes at a time when global food production and distribution is dominated by powerful transnational corporations through an agro-industrial food system that is widely critiqued for its negative environmental and social impacts. Many argue that this industrial food system is unsustainable, yet its expansion can seem inevitable and alternatives are seen by many as incapable of feeding the world’s growing and increasingly urban population. ‘Value chain’ interventions have become popular among ‘development’ practitioners and policy makers seeking to integrate more producers into the global industrial food system rather than challenging that food system.

    What I have found, and present in this thesis, is a ‘symbiotic food system’ made up of multitudes of small-scale and interdependent actors that produce the food and get it to urban eaters at a city feeding scale. They do this without any vertically - or horizontally -integrated corporate structures nor with government planning and organization of the food system. This food system responds well to the needs of urban eaters, especially those in poverty, and to the interests and circumstances of small scale food producers. It is a food system that outperforms value chain interventions in returns to producers and value to eaters and has social, economic and environmental advantages when compared to the agro-industrial and corporate dominated system. This challenges assumptions that corporate food chains are necessary, or desirable, to feed cities sustainably. The symbiotic food system that feeds Dar es Salaam is not perfect, but it is working and I believe worthy of further research and interventions to create a more enabling environment for such foods systems to flourish in Tanzania and elsewhere.

    Agricultural intensification in Nepal, with particular reference to systems of rice intensification
    Uprety, Rajendra - \ 2016
    Wageningen University. Promotor(en): Thomas Kuijper, co-promotor(en): Harro Maat. - Wageningen : Wageningen University - ISBN 9789462579651 - 190
    rice - oryza sativa - nepal - asia - south asia - intensification - livelihoods - livelihood strategies - farming systems - farming - crop management - fertilizers - nutrients - irrigation - varieties - rijst - oryza sativa - nepal - azië - zuid-azië - intensivering - middelen van bestaan - strategieën voor levensonderhoud - bedrijfssystemen - landbouw bedrijven - gewasteelt - kunstmeststoffen - voedingsstoffen - irrigatie - rassen (planten)

    This thesis deals with agricultural intensification in Nepal. The initial focus of the study was the System of Rice Intensification (SRI), as introduced in Nepal from 2001. The multiple factors affecting SRI adoption, modification and dissemination together with the option to apply SRI in different combinations of its components result in a variety of SRI applications. For the same reason the effect of SRI on overall agricultural and livelihood development of Nepalese farmers has to be evaluated within the variety of farming systems in which it is applied.

    Despite government policies to promote rice cultivation, national rice production is declining. Farmer livelihood strategies, as reflected in rice farming systems, and field management strategies were influenced by several agro-ecological and socio-economic factors. Livelihood and field management strategies of rice farmers are interconnected. In the study presented here four livelihood strategies and three kinds of field management strategies are distinguished. Two livelihood strategies can be characterized as more intensive and more productive; the other two are less intensive and less productive. Livelihood strategies are more family resource-based strategies, while farmers’ field management strategies are more context-dependent. Field management strategies were characterized by forms of nutrient management. Intensive management strategies had most similarities with SRI. But rice intensification is not achievable as a general strategy.

    Government policies (fertiliser subsidies) encourage increased fertiliser use. Study results didn't show any significant effect of volume of fertilisers on rice yield but the combined use of organic manure and mineral fertilisers resulted in the highest average rice yields. Irrigation management is another important factor for rice production. Field management is influenced by the reliability of water which was better in farmers' managed irrigation system. Choice of rice varieties influenced the overall rice farming system and cropping intensity and preference of varieties for rice cultivation by scientists and by farmers were different in eastern Nepal. Most popular varieties were those not recommended by science and policy and were disseminated farmer to farmer.

    The introduction of SRI in Morang district resulted in several changes in rice farming, but only part of the farmers have adopted such technologies, and adoption has been only in part of their fields. Other farmers have incorporated some SRI practices in their conventional practices. After the introduction of SRI, farmers further tested, re-packaged or hybridized SRI methods to make SRI ideas suitable for their agro-ecological and socio-economic environments. In order to reform Nepalese rice farming, we need to recognize that different farmers, with different livelihood strategies, and with access to different kinds of fields, need different forms for agricultural intensification. High-intensive farmers prefer to use modified SRI methods where there is good irrigation and drainage facilities. There are many possibilities for improvement of the existing nutrient management practices of rice farmers in Nepal. Nutrient management will be useful to increase rice production because the majority of farmers currently use fertilisers non-judiciously. The SRI-recommended practices (younger seedlings, early weeding, use of organic manure, and alternate wetting and drying (AWD) irrigation) will be useful to improve the nutrient use efficiency of rice farmers. Cost-reduction strategies and less labour-intensive cultivation practices will be appropriate options to improve existing rice farming system of Nepal. Participatory cultivar selection and dissemination will be better strategies to introduce new, promising rice cultivars among rice farmers.

    Seeds as biosocial commons : an analysis of various practices in India
    Patnaik, Archana - \ 2016
    Wageningen University. Promotor(en): Guido Ruivenkamp; Han Wiskerke, co-promotor(en): Joost Jongerden. - Wageningen : Wageningen University - ISBN 9789462578302 - 166
    rice - seeds - plant genetic resources - plant genetics - seed production - seed storage - community development - gender - social environment - india - rural development - rijst - zaden - genetische bronnen van plantensoorten - plantengenetica - zaadproductie - opslag van zaden - gemeenschapsontwikkeling - geslacht (gender) - sociaal milieu - india - plattelandsontwikkeling

    This research investigates and describes the conservation and use of Plant Genetic Resources (PGRs), especially seeds through processes of commonisation. Seeds form an important element for sustaining human life (through food production) and social relations (by maintaining agricultural socialities). Therefore, conservation and management of PGRs in the form of seeds are essential for plant breeding, agricultural production and to meet the growing food demand of the increasing population. However, the changed use of PGRs through enclosures and appropriation of the Intellectual Property Rights creates underutilisation of these resources, risking their important societal role. Thus, this research aimed at analysing how the processes of commonisation of PGRs, especially seeds as biosocial commons emerge in the Indian context.

    The research applied an in-depth qualitative research approach using case study method. It focused on four distinct issues of disconnection, collective resistance, strategies of repossession and ability of stakeholders to provide insights broadly into the processes of commonisation of PGRs. Describing the different cases it also establishes whether and how opportunities for commonisation of PGRs as biosocial commons emerge within these contexts. The research analysed four cases where one case reflected on the intellectual commons produced through institutionalisation of PGRs and the other three cases reflected on the bottom-up perspective of commons produced through Non-Governmental Organisations (NGOs).

    The research through its first case, the Central Rice Research Institute (CRRI), a public ex situ genebank, describes the disconnection of PGRs, while through the second case reflects on the collective activity of resistance through management of community seed banks (CSBs) by the Deccan Development Society (DDS). The third and fourth cases involved small, local initiatives; Loka Samabaya Pratisthan (LSP) and Sambhav that fostered collective action for repossession through in situ seed banks. The research used various techniques, such as interviews with respondents, focus group discussions (FGDs) and participant observation for primary sources of data, with published and unpublished documents, reports and official websites as secondary sources.

    The second chapter of the thesis looks at the issue of disconnection and argues that storing seeds at genebanks disconnects the resources from their biosocial environment. Further, the evaluation of genetic traits within the stored seeds through the scientific intervention at the genebank creates the divide between the resources (seeds) and their informational content. Thus, this chapter concludes that disconnection of seeds from their biosocial environment leads to the creation of exclusive but positive intellectual commons.

    The third chapter of the thesis looks at the issue of collective resistance and argues that disconnection of the community from their local food system can generate resistance and collective activity among the community. This chapter finds that the resistance and collective activity further brought in the interaction between the resource and the stakeholders through informal social relations and seed networks.

    The fourth chapter of the thesis looks at the issue of strategies of repossession and argues that socio-political and ecological context play an important role in determining the strategy for repossession and commonisation of PGRs which further inhibits or facilitates the production of seeds as biosocial commons.

    The fifth chapter of the thesis analyses the ability of stakeholders and finds that apart from institutional rights other factors like the social relations, ideology, negotiations and social identity of a stakeholder determines their ability in accessing the conserved resources.

    The overall finding of the research suggests that the informal seed networks in the cases analysed stimulated in establishing the biosocial relations between the stakeholders and the resources. The biosocial relation further led seeds to function as biosocial commons. The research thus proposes that strengthening of these biosocial relations through informal seed networks can lead to the commonisation of the PGRs, especially seeds as biosocial commons in the Indian context.

    Lubrication and perception of foods : tribological, rheological and sensory properties of particle-filled food system
    Liu, K. - \ 2016
    Wageningen University. Promotor(en): Erik van der Linden, co-promotor(en): Markus Stieger; Fred van de Velde. - Wageningen : Wageningen University - ISBN 9789462576803 - 236
    rheological properties - tribology - fat globules - particles - lubrication - sensory evaluation - simulation models - food - gels - rice - reologische eigenschappen - tribologie - vetbolletjes - deeltjes - smering - sensorische evaluatie - simulatiemodellen - voedsel - gels - rijst

    Background and aims

    Food structure is determined by its composition and the interaction between the compositional or structural elements. Both food structure and the texture perception of foods undergo dynamic changes during different phases of oral processing. During oral processing, both rheological and tribological properties of foods are relevant for sensory perception. The general aim of this thesis was to understand the relationship between the structural properties, rheological and tribological properties during food breakdown, and the sensory perception of foods. More specifically, this thesis aimed to link the properties of food particles in liquid and semi-solid matrices to the tribological and rheological properties, and in this way, understand the sensory perception of these systems.


    Fat droplets and micro-particle fat replacers based on protein and starch were investigated. These particles varied in size, morphology, deformability and stability, as well as their interaction with the surrounding matrix. These particles were dispersed in liquid or semi-solid gel phases, forming the food model systems under consideration. The friction and microstructural evolution of food model systems under shear was determined using a mouth-mimicking tribometer connected to a confocal laser scanning microscopy. The viscosities of liquid systems were analyzed using a rheometer, and the large deformation properties of semi-solid gel systems were determined during uniaxial compression tests. The sensory perception of the food model systems were measured using quantitative descriptive analysis. The release and deposition of fat droplets on the tongue were determined using in vivo fluorescence.


    Food structural elements could be manipulated to control the tribological properties of food model systems. Morphology, size, and deformability of food particles determine the lubrication behavior of the food systems. Spherical particles with micrometer size were able to reduce friction through a ball bearing mechanism, while irregularly shaped particles increased friction by increasing apparent surface asperity contacts. Deformable particles could flatten the surface by filling asperities, thus reduced friction. Coalescence of unstable droplets could plate-out on the surface and form film patches, thus reduced friction. Other structural elements, such as emulsifiers and sticky molecules, also influenced tribological properties of the systems. Interactions between the food structural elements could influence the rheological properties of liquid and semi-solid food systems. These properties as well as tribological properties were inter-related and all of them affect sensory perception. The inter-relations between physical and sensory properties of food systems were influenced by oral processing, such as oral processing duration and temperature. Furthermore, several fat reduction and replacement strategies were suggested, including increasing the availability of fat that is in contact with oral surfaces, improving the lubrication by ball bearing of particles, and reducing perception of negative attributes such as roughness.


    This thesis showed the importance of food particle properties in both the tribological properties and sensory perception of foods, and emphasized the different lubrication mechanisms of different structure elements and their relation to perception. The differences in behavior of food particles between liquid and semi-solid gel systems were highlighted. These findings would enable a better understanding of relationship between food structure and their physical and sensory properties, and this would allow designing or modifying food products with targeted texture and sensory perception.

    Network formation, learning and innovation in multi-stakeholder research projects : experiences with Adaptive Research and Learning Alliances in rice farming communities in Southeast Asia
    Flor, R.J. - \ 2016
    Wageningen University. Promotor(en): C. Leeuwis, co-promotor(en): H. Maat; Grant Singleton. - Wageningen : Wageningen University - ISBN 9789462576650 - 230
    learning activities - adult learning - learning - social networks - education - agricultural education - rice - farming - agricultural extension - south east asia - cambodia - leeractiviteiten - volwassenenstudie - leren - sociale netwerken - onderwijs - agrarisch onderwijs - rijst - landbouw bedrijven - landbouwvoorlichting - zuidoost-azië - cambodja

    Mounting pressure on research organizations to achieve sustainable development outcomes from research has pushed them to use multi-stakeholder approaches. Insights are missing however, on how these influence social, technical, and institutional change, as well as what outcomes emerge from these. The thesis is an examination of the enactment of multi-stakeholder approaches, questioning how and to what extent Adaptive Research (AR) and Learning Alliance (LA) approaches influence socio-technical innovation in rice farming communities. Four case studies of research and development projects that employed the approaches in rice farming communities were elaborated in this thesis.

    AR implementation in Indonesia (chapter 2), showed how AR fast-tracked technical adaptations and built upon the improvisational capacities of farmers. AR monitoring however, rendered invisible the adaptations required on the social aspect. Simultaneous social, technical, and institutional redesign was limited.

    A case of LA implemented at national level engaged a network that changed and expanded after three years to include diverse actors (chapter 3). There were points where implementation (mis)aligned with assumptions from project implementers and from conceptual literature of the LA approach. The network influenced change at community level by engaging small groups that made reconfigurations on the technologies and the social arrangements for these (chapter 4). A community-level LA in Myanmar was also found to stimulate a self-organized learning process towards innovation for flatbed dryer technology (chapter 5).

    A case where a project used AR only versus AR with LA in Myanmar (chapter 6), revealed differing networks, learning processes, and outcomes in terms of learning agenda. The involvement of a wider network resulted in a broader set of activities, which were initiatives outside the original plans of the project. The learning activities were not only about technologies but also included experimentations on supportive environment for access and use of the technologies.

    This thesis therefore demonstrates that project actors implement AR and LA approaches through a range of translations in multiple contexts. These imply varied interactions in different types of networks. Such interactions triggered varied learning processes and thus influenced different planned or emergent outcomes. Both approaches have potential to catalyze innovation in farming communities; however, outcomes on adoption numbers provide a caveat that these approaches are not silver bullets that guarantee technology adoption. Instead, implementation that facilitates effective learning processes, and monitoring that flags where projects could support emergent outcomes, can help implementers improve their contributions to development in farming communities.

    Interactions among rice-Xanthomonas-Rhizoctonia and biostimulans : Design of a framword to test the effect of a multiple species control of Xanthomonas and Rhizoctonia in rice
    Wurff, A.W.G. van der; Streminska, M.A. ; Elings, A. - \ 2016
    Bleiswijk : Wageningen UR Glastuinbouw (Report GTB 1390) - 26
    arable farming - rice - oryza - sustainable agriculture - plant protection - biological control - integrated control - xanthomonas - rhizoctonia - indonesia - akkerbouw - rijst - oryza - duurzame landbouw - gewasbescherming - biologische bestrijding - geïntegreerde bestrijding - xanthomonas - rhizoctonia - indonesië
    The Indonesian Ministry of Agriculture has the ambition to boast the sustainable production of rice in order to meet the increasing demand. Resource use efficiency can be improved if production loss owing to plant
    pathogens is resolved. Knowledge on the role of biodiversity on system stability must be translated Agricultural practices. Species with overlap in function may constitute biological control measures to create a resilient system against pathogens. As species may counteract, the approach needs to take into account the diverse effects caused by different pathogens, both above-ground and below-ground. Above-ground as well as belowground biological control may benefit from a multiple species approach. Pest-enemy interactions are often embedded in rich communities of multiple interacting pathogens and natural enemies. Designing IPM for multiple pests requires understanding of all interactions among species, both pests and natural enemies. The goal of the research is to investigate which currently available biological control agents are compatible or even act synergistically in order to build a resilient and sustainable crop protection system against Xanthomonas and Rhizoctonia in rice in Indonesia.
    Adaptation of the brown planthopper, Nilaparvata lugens (Sta°l), to resistant rice varieties
    Ferrater, J.B. - \ 2015
    Wageningen University. Promotor(en): Marcel Dicke, co-promotor(en): F.G. Horgan; Peter de Jong. - Wageningen : Wageningen University - ISBN 9789462575592 - 200
    insectenplagen - nilaparvata lugens - adaptatie - oryza sativa - rijst - cultivars - plaagresistentie - symbionten - gisten - endosymbionten - insect pests - nilaparvata lugens - adaptation - oryza sativa - rice - cultivars - pest resistance - symbionts - yeasts - endosymbionts

    This thesis examines the three-way interaction between yeast-like symbionts, an insect herbivore [Nilaparvata lugens (Stål)] and its rice (Oryza sativa L.) host, during adaptation of the herbivore to resistant rice varieties. A long-term selection study (20 generations of continuous rearing, ca. 24 months) was conducted with N. lugens populations on four rice varieties (IR22, a susceptible variety and IR65482, IR62, and PTB33, three resistant varieties). Planthopper performance and the abundance of yeast-like symbionts (YLS) were monitored throughout the selection process. N. lugens populations adapted to the resistant varieties as noted by increasing body size and increased egglaying. Xylem feeding was observed as a possible behavioural adaptation of N. lugens: planthoppers on resistant plants had relatively high levels of xylem feeding compared with planthoppers on susceptible plants. Planthoppers selected on resistant varieties, had clear differences in YLS densities that were not related to fitness on the varieties and, therefore, did not support a YLS density-mediated adaptation hypothesis.

    Furthermore, this study examined whether YLS density affected the capacity of planthoppers to switch between hosts on which they have been selected for several generations (natal plant) to new varieties (exposed plants) under normal YLS densities (symbiotic) and after reduction of YLS densities by heat treatment (aposymbiotic). The results suggested that YLS do not mediate host plant switching in planthoppers as removal of symbionts influenced body weight but not the relative capacity of nymphs to feed on different plants. This study also tested if virulence is acquired by shared feeding sites with virulent and avirulent planthoppers. In the study, planthoppers with varying levels of virulence affected the host plants differently: The most virulent hoppers appeared to suppress rice defences to a greater extent than non-virulent planthoppers. Planthoppers attained highest weights on those plants on which virulent planthoppers had previously fed which suggests that feeding by the virulent planthoppers facilitated subsequent planthopper feeding on the same plant. Our preliminary results indicate that feeding by mixed virulent-avirulent populations could potentially accelerate adaptation by N. lugens to resistant rice varieties.

    The capacity of virulent and avirulent planthoppers to feed on a range of 24 resistant rice varieties was examined using a series of bioassays. Planthoppers were observed to feed and lay eggs on all the varieties tested, many of which have never been widely deployed in the field. Furthermore, planthoppers selected on resistant varieties often had increased fitness on other resistant varieties, even when these possess different resistance genes. However, there was no strong evidence that once planthoppers have adapted to a resistant variety, they will exhibit fitness costs on other varieties with dissimilar genes. The mechanisms underlying insect virulence are complex and further research on planthopper adaptation is necessary to help conserve genetic resources and prolong the durability of available resistant varieties.

    How smallholder farmers in Uttarakhand reworked the system of rice intensification: innovations from sociotechnical interactions in fields and villages
    Sen, D. - \ 2015
    Wageningen University. Promotor(en): Paul Richards, co-promotor(en): Harro Maat; C. Shambu Prasad; Dominic Glover. - Wageningen : Wageningen University - ISBN 9789462575868 - 188
    bedrijfssystemenonderzoek - rijst - uttarakhand - india - duurzame landbouw - farming systems research - rice - uttarakhand - india - sustainable agriculture

    The System of Rice Intensification (SRI) is presented in Asia and other parts of the world as an alternative ‘agro-ecological’ and ‘farm-based’ innovation in rice production. SRI calls for modifications in crop-management practices without relying on external inputs, which makes it different from innovations based on new rice varieties, which became dominant since the Green Revolution. SRI practices are therefore said to be appropriate for resource-poor smallholder farmers.

    Previous studies on SRI have focused mainly on the yield effects in comparison with other crop management practices, overall costs and benefits of SRI or deviations from recommended practices. These studies have largely neglected farmers’ underlying strategies. This thesis provides an understanding of whether and how SRI can be called a ‘farm-based’ innovation. Rather than returning to earlier debates about SRI's adoption and disadoption, the study looks as how farm households and communities in Western Himalayan region of India responded to the introduction of SRI.

    The main objective of this research was to understand how farmers respond to an intervention like SRI and what this tells us about SRI as a socio-technical system. The main research question addressed by this thesis is how SRI, conceived as a set of practices introduced from outside the communities, was incorporated into the local rice farming system. Specifically, the thesis examines how existing work groups were adjusted to accommodate the new method, how the SRI practices were interpreted and adjusted to fit with the local social and agro-ecological arrangements, and how the new method influenced existing rice farming practices in the locality.

    The research was carried out in three contrasting villages of Uttarakhand, located in the Bhilangana sub-basin of the Western Himalayan region of India. SRI was introduced in this area in 2008. Fieldwork in the three villages was conducted throughout two rice seasons.

    The theoretical resources drawn upon for this research include the concept of “socio-technical system”, “agriculture as performance”, and the culture of “task groups”. Together these concepts help to understand rice farming as a collective and mutually shaping social and technical performance rather than the activity of an individual farmer. The thesis shows how existing and new rice farming practices and task groups are reconfigured through socio-technical innovations within a given agro-ecological setting. SRI acted as a catalyst, initiating a process of readjustments in the socio-technical configurations of rice farming, varying according to the local context. Farm households, while incorporating SRI into the existing farming system, try to seek complementarity and synergy between various rice farming methods. This allows fluidity among task groups and leads to the extension and diversification of the repertoire of methods used, taking into account the dynamics of the larger socio-economic conditions. The thesis highlights farmers’ adaptive capacities to reconfigure practices, reorganize social formations, and reschedule routines in response to farming interventions, in order to maximize the exploitation of agro-ecological niches, minimize uncertainty in farm production and rationalize the employment of the available work force.

    The study indicates a potential for task groups as units for effectively promoting new agricultural interventions. The groups performing farm operations are crucial in developing and adjusting farmers’ managerial skills to cater to the needs of the rice crop in light of the social and economic conditions of the community. For instance, elements of the set of SRI practices, like the use of younger seedlings, fewer seedlings per hill and wider spacing of hills were shown to have influenced practices in nominally ‘non-SRI’ plots. Changes in customary ritual like Din Bar announcing the date of rice transplanting, elevation in the status of Village Level Resource Persons (VLRPs), emergence of different forms of raised bed nurseries (RBNs), and inclusion of young women in transplanting groups reflect how introduction of SRI brought about changes in the social structure and institutions. This thesis thus highlights the role and importance of the human management component in farming activities and agricultural development. This provided insights into the integration of social and technical dimensions of crop cultivation, particularly the dynamics of rice farming using SRI but also for agronomy as a whole.

    Keywords: Rice, smallholder farmers, System of Rice Intensification (SRI), socio-technical interactions, farm based innovations, task groups, technical practices, labour organization, mountain farms, Uttarakhand in India.

    African rice (Oryza glaberrima) cultivation in the Togo Hills: ecological and socio-cultural cues in farmer seed selection and development
    Teeken, B.W.E. - \ 2015
    Wageningen University. Promotor(en): Paul Richards; Paul Struik, co-promotor(en): Harro Maat; Edwin Nuijten. - Wageningen : Wageningen University - ISBN 9789462574359 - 306
    oryza glaberrima - rijst - familiebedrijven, landbouw - veredelde rassen - sociale gebruiken - voedselzekerheid - afrika - oryza glaberrima - rice - family farms - improved varieties - social customs - food security - africa


    Teeken B (2015). African rice (Oryza glaberrima) cultivation in the Togo Hills: ecological and socio-cultural cues in farmer seed selection and development. PhD thesis, Wageningen University, The Netherlands, 306 pp.

    The low adoption rates of modern technologies in West Africa, such as improved rice varieties, suggest a gap between the motivations of farmers and development agencies. Many smallholder rice farmers in West Africa continue to rely on farmer varieties, farmer saved seeds and farmer seed system innovations. A better understanding of local farming practices and how they relate to farmer communities and their culture, as well as to the landscapes and climate within which the crop is grown might result in more successful initiatives to strengthen rice cultivation and improve food security and the livelihood of the many small scale rice growers in West Africa. As African rice has never been improved scientifically or commercially it is an important entry point to study farmers’ variety selection and development. By studying farmer variety selection and development related to African rice within the Togo Hills in Ghana and Togo, a region that is ecologically as well as political-economically  and culturally diverse, the research presented in this thesis tries to unravel the interactions between genetics, ecology and society (G × E × S).

    Results show that in the Ghanaian Togo Hills cultural factors set additional and rice diversity enhancing criteria for selection, while in Togo selection criteria are mostly pragmatically agronomic and ecological factors dominate. This can be understood by the higher necessity in Ghana to construct identity and autonomy within the larger and more dynamic economic and political powers of competition and individualization. Here African rice has become a tool to shape such identity. Despite the ecological, cultural and political-economic differences within the Togo Hills, farmers in all the case studies selected a set of different varieties used for different purposes rather than a uniform type. This can be seen as a continuation of their earlier dynamic history in which the maintenance of diversity was part of a risk spreading strategy facilitating emergent innovations that suited such dynamics. Other examples from West Africa also show the different combinations of social and natural factors within the maintenance of rice diversity. Importantly farmers in West Africa have developed varieties that are robust and versatile: able to perform in very different ecologies and societal settings. African rice was found to be particularly robust.

    This research therefore shows the importance of the “genealogies” between the genetic, the ecological and the social within variety development and food security issues. Therefore, it is the task of science to take an evolutionary perspective. These genealogies and their products should be made visible and need juxtaposition to formal scientific breeding strategies, strategies to tackle food security and agricultural and societal development issues in general. This indicates that there is a systemic alternative to a top-down Green Revolution in Africa. Trajectories of interaction between the social and the natural have produced a large variety of versatile resources and are crucial within tackling development issues in areas where such trajectories took place: there where farmer conditions are dynamic and suboptimal. Instead of anthropologically mapping local cultural preferences (these can change quickly over time and can vary over small distances) it is much more fruitful to emanate from and also disseminate the varieties farmers have already developed themselves.



    Speciation of trace metals and their uptake by rice in paddy soils
    Pan, Y. - \ 2015
    Wageningen University. Promotor(en): Rob Comans, co-promotor(en): Gerwin Koopmans; J. Song. - Wageningen : Wageningen University - ISBN 9789462572744
    oryza sativa - rijst - padigronden - sporenelementen - voedingsstoffenopname (planten) - bodemchemie - natte rijst - oplosbaarheid - oryza sativa - rice - paddy soils - trace elements - nutrient uptake - soil chemistry - flooded rice - solubility

    Rice (Oryza sativa L.) is the most important staple food in South and Southeast Asia and plays a crucial role in food security. However, with fast urbanization and industrialization and economic growth in these parts of the world, the production and quality of rice has become an increasing concern, because contamination of paddy soils with trace metals in industrialized areas can lead to yield reduction of rice, a decline in the nutritional quality of the rice, and an accumulation of trace metals in rice grains. In this PhD thesis, I used a combination of experimental research and mechanistic modeling to investigate the solubility of trace metals in paddy soils exposed to alternating flooding and drainage conditions and to link trace metal solubility to the uptake by rice plants over time. This work contributes to the understanding of how redox chemistry affects the solubility of trace metals in flooded soil and sediment systems and provides a tool for the measurement of the free trace metal concentrations in flooded soil and sediment systems in situ in the form of the field DMT.

    Subsurface drainage of valley bottom irrigated rice schemes in tropical savannah : case studies of Tiefora and Moussodougou in Burkina Faso
    Keïta, A. - \ 2015
    Wageningen University. Promotor(en): E. Schultz; H. Yacouba. - Leiden : CRC Press/Balkema - ISBN 9789462572638
    oryza - ondergrondse drainage - drainage - irrigatie - rijst - savannen - irrigatiesystemen - waterbeheer - burkina faso - oryza - subsurface drainage - drainage - irrigation - rice - savannas - irrigation systems - water management - burkina faso


    The contrasted global population growth with the multiplication of the constraints to developing new irrigation systems puts a special challenge upon human crop production systems that needs to be taken up. The populations in many countries in Asia, Middle East and Africa are expected to double in the coming 50 years. The experience of the green revolution in Asia – during which 70% of food production increase was provided by irrigated agriculture – shows that there is not only a need to strive to increase such crop production systems, but also to improve the production efficiency of existing ones. In fact, as a much worrying case, rice production in valley bottom irrigated lands of African Tropical Savannah is far to yield the expected amount of cereals. One of the major constraints to this production is iron toxicity subsequent to poor drainage conditions. According to Africa Rice, at least 60% of the Tropical Savannah swampy valley bottoms are affected by different degree of iron toxicity. The yield in many areas drops to zero, leaving behind millions of disappointed and impoverished farmers. Therefore, it is not surprising that there is strong research dynamic – ranging from agronomy to microbiology – that strives to propose alleviating solutions to rice iron toxicity. Because prevalent anoxic conditions in the soil combined with iron reducing bacteria development were found a basic contributing factor to iron toxicity,  this research has chosen to investigate subsurface drainage potential contributions to solving this issue.

    Two complementary series of operations – designed within two project- components and focused on five basic questions closely related to the contributing factors to iron toxicity development – were performed. In fact, the research project was implemented in two major components: field surveys and designed experiments. The field surveys investigated iron toxicity triggering or aggravating factors such as clay proportions, ferrous ion Fe2+ concentration, dissolved oxygen, soil acidity or water management. Drawing profit from the knowledge gained in survey research and literature review, two parallel experiments were designed using concrete microplots on one hand and buckets on the other hand, to statistically ascertain the impact of subsurface on soil acidity and ferrous iron concentration changes. All the operations performed within the two components of this research project endeavoured to answer the following five research questions:


    1. how is ferrous iron formed and distributed in soils invaded by iron toxicity?
    2. how is clay spread within the valley?
    3. how is soil permeability affected by clay distribution in the valley?
    4. how can water management help improve soil conditions?
    5. what is the impact of subsurface drainage on iron toxicity?


    The answers to these research questions – already published or in press – are exposed below, followed by the contribution of this research project in two areas: i) science en engineering, and ii) socio-economy.

    Clay and ferrous iron may deposit in strata

    High ferrous ion Fe2+ concentration, inserted into dense clay strata, constitutes an important threat to rice production in several tropical Savannah valley irrigation schemes  of  West  Africa.  Many  actions  are  currently  undertaken  to  alleviate  iron


    toxicity. In this study, we have investigated the presence of clay and ferrous iron stratifications within a typical flood prone valley bottom called Tiefora in Burkina Faso. Taking into account the multiple slopes of the valley, two randomized soil samplings were implemented at various depths. Samples were collected as deep as 500 cm, but especially at 30, 50 and 100 cm. The clay percentage was determined by grain size analysis. Ferrous iron concentrations were obtained through the reflectometric method. The stratifications of clay and ferrous ion Fe2+ were checked using statistical hypothesis testing (ANOVA and Welch t-Test). Clay percentage within the first 100 cm top soil – 28.9% – was found twice higher than in the layers underneath. Furthermore, ferrous iron was mainly located in the top 30 cm, with a mean concentration of 994 mg/l. This ferrous iron concentration is much higher than found at depths 50 and 100 cm underneath (73 mg/l), while the pH of all the three layers is almost neutral. This striking stratification suggests several means of alleviating iron toxicity. Among these means, we propose maintaining wet conditions during the growing period in the irrigated lands in combination with leaching by subsurface drainage in the fallow periods.


    Iron toxicity risk is higher in single season irrigation schemes


    With the aim of finding the geochemical differences and helping to build alleviating strategies against iron toxicity, two hematite dominant valley bottoms irrigated rice soils were investigated in the Tropical Savannah region of Burkina Faso. The first site was Tiefora, a 16 ha modern double-season irrigated rice scheme and moderately affected by iron toxicity (10% of the area with a toxicity score of 4). The second site was Moussodougou, a 35 ha traditional single-season irrigated rice valley-bottom, with 50% facing more severe iron toxicity (score 7). Nine soil extracts were taken from three depths – 30,  50 and 100 cm – i.e. 27 at Tiefora  and 27 at  Moussodougou.  Five techniques were used to measure the data: i) the ferrous iron concentration was determined using a reflectometer, ii) a pH-meter yielded the pH, iii) clay-proportions were obtained by United States Department of Army (USDA) grain size analysis and densitometry, iv) the organic matter was determined by oven drying and v) the dry bulk density was determined by using undisturbed soil samples. Statistical hypothesis testing of One-way ANOVA and Welch t-test were applied to the data to isolate the similarities and the differences between the two sites. A geochemical analysis followed to find the causes of these differences. The results showed that while oxidation of pyrite leads to a simultaneous increase in Fe2+ concentrations and acidity in the soils of coastal floodplains and  mangroves,  the oxidation of hematite in  Tropical savannah valley

    bottoms decreases Fe2+ but also increases acidity during the dry season. As a consequence, it was found that the single-season irrigation scheme of Moussodougou is significantly (p-value 0.4%) more acidic (pH 5.7) than the double-season system of Tiefora (pH 6.4) with also 750-1800 mg/l higher ferrous ion Fe2+. The ferrous iron reached 3000 mg/l in some layers in Moussodougou. This result is a justification to modernize traditional single-season spate irrigation schemes into double-season irrigated rice schemes.


    Subsurface drainage type depends on clay distribution


    Waterlogged valley bottom soils of Tropical Savannah are areas where the richest traditional cropping systems are found, but they also face adverse physical and chemical conditions which can drastically drop rice yield. Subsurface drainage has been used for many areas to alleviate waterlogging. However, this drainage is dependent of clay

    distribution, type and location. The current research analysed these factors using the case of Tiefora. For this purpose nine boreholes, with depths from 2 to 6 m, were realised. Some 50 samples of soils were extracted at various depths, based on soil changes in texture and colour. These samples underwent grain-size-analysis. A comparative non-linear regression was performed on the clay distribution. Quadratic regression was the most appropriate. Clay proportions were high - 20-30% in the 2 m topsoil - in the upstream and middle areas. A more important - 30-40% - peak was reached in the downstream area at 1 m-depth, with a much smaller thickness (less than 50 cm) and higher permeability. These results suggest the application of mole drainage in the valley, except downstream where the classical Hooghoudt pipe subsurface drainage can be implemented.


    Subsurface drainage cost can be reduced by taking into account permeability distribution in valley


    In flood prone Tropical Savannah valley soils very low infiltration rates often result in acidic conditions favourable to high concentrations of metallic ions, toxic for rice. The infiltration rate determination is important in drainage design to reclaim degraded soils. Several studies have addressed the mapping of the infiltration rate. Yet its relationship with the toposequence of the valley is not clarified. This research has investigated such possibility, examining the case of the irrigated rice valley of Tiefora. Nine boreholes – 1 to 5 m deep – were implemented from upstream to downstream. The Lefranc permeability test of under phreatic conditions in waterlogged soils – used when the impervious layer is close to soil surface or absent – was conducted. First, a comparative regression was applied to the data, including all the parameters of the regression curves. In case of dissimilarity of the infiltration processes, the comparison focused on the final permeability. Our results show a permeability increase from upstream (0.10 ± 0.10 cm/hr) to downstream (greater than 20.0 ± 10.0 cm/h in some places). Taking into account such permeability increase in subsurface drainage system design would result in the implementation of more efficient and cost effective systems.


    Data based water management can help to reduce water losses and solve water inequity frictions between farmers


    Surface irrigation represents more than 99% of the irrigated area in West Africa and generally includes valley bottoms dedicated to irrigated rice production, which are often denounced as water overusing schemes. Surprisingly, there is neither follow up nor analysis of the irrigation water used in these gravity irrigation systems. Such a work was carried out in the case of the 16 ha Tropical Savannah irrigated rice valley bottom scheme of Tiefora. Using the flow equation of the concrete weir at the headwork, daily water use volumes were calculated as time series covering more than one-year period. The moving average trend analysis reveals that during both the rainy season (1200 mm of rainfall) and the dry season (no rainfall), the main canal gate is almost never closed, keeping a minimum discharge of 200 m3/day for 4 ha (50 mm/day versus. a local evapotranspiration of 7 mm/day). That stresses the necessity of a more rigorous water management. Furthermore, the autocorrelation analysis by using the ARIMA model showed that the irrigation cycle that ensures equity in water distribution among farm plots is 20 days instead of five. The knowledge of this fact can defuse potential conflicts about equity among farmers: the lack of water in day 4 may be compensated later during the 20-day cycle. It appeared that a simple water level measuring device – installed at the headwork of the main irrigation canal – can produce a time series to

    which autoregressive moving average model can be applied to yield, at low cost, a thorough assessment of water management in this surface irrigation system.


    Subsurface drainage alleviates iron toxicity in mean and long run


    Iron toxicity is one of the most important constraints that hinder rice productivity in Tropical Savannah valley bottom irrigated fields, but fortunately that can be alleviated. A too high ferrous iron level in the soil can nullify rice yield. Several research fields – agronomy, pedology through microbiology – strive to provide a solution to this issue. Up to date, the contribution of hydraulics to tackle iron toxicity remained limited. The current research addressed this aspect through controlled experiments on highly ferrous iron contaminated rice hematite soils. Twelve concrete microplots and eight buckets were used to implement two independent designed experiments during a period of 86 days. Drainage and liming were the two factors whose impacts were investigated. Drainage was used with two treatment conditions: 0 mm/day and = 10 mm/day, and liming also had two treatment conditions: Lime- = 0 kg/m² and Lime+ = 1 kg/m² per unit increment increase of the pH. Four different responses in the soil were measured: ferrous ion concentration Fe2+, pH, oxido reduction potential, and the dissolved oxygen. For the rice, toxicity scores of the International Rice Research Institute were followed

    up. The results indicate an increase of Fe2+ from 935 mg/l to more than 1106 mg/l (at 95% of confidence level), but, which is interesting, with a significant decrease of soil acidity from pH 5.6 to 7.3 (95% confidence level). Liming had the same effect in alleviating the acidity. Reduction processes were not hindered by subsurface drainage since the oxydo reduction potential dropped from 84.6 to 9.2 mV, and dissolved oxygen

    moved from 1 mg/l to less than 0.1 mg/l. Despite of the reduction of the acidity, with such a high ferrous iron level as 1106 mg/l, the iron toxicity score reached 7 in the twelve microplots and the rice died. Still, the reduction of soil acidity provides a new insight on the hematite soils behaviour, opposite to the acidification with subsurface drainage in coastal floodplains and mangrove pyrite. Furthermore, it will lead to less ferrous iron intake by rice roots and in such perspective improve the rice yield. Finally, though liming can achieve the same result, subsurface drainage takes the advantage when this mineral is not available or is expensive.


    Project outputs for Tiefora farmers


    From the investigations and their supporting activities, two major benefits were brought to the farmers of Tiefora. First, in order to alleviated iron toxicity – which is much less severe in this place than in Moussodougou – and improve rice yield (less than 4 tons/ha), it would be essential to apply according the norms of the Institute of Environment and Agricultural Research (IN.ERA) the complex fertilizer NPK. However, this application should go along with making well built bunds around the farm plots in order to confine the fertilizer and make the mineral more available for the rice roots. This  will invigorate the crop  and thus  strengthen  its resistance to iron toxicity. Secondly, the project handed to the farmers’ association of Tiefora three key documents: i) an aerial photo the environment of the valley of Tiefora, including the reservoir, the village, the roads and the irrigated valley, ii) a topographical map of the valley bottom, intended to help in potential engineering works on the irrigation system, and iii) a detailed map of the farm plot system, accompanied with the complete list of the farmers and their farm sizes, and the location of iron intoxicated plots for their daily activities


    Project outputs for Moussodougou farmers


    Based on the investigation results and due to the severe iron toxicity in Moussodougou, the project provided several advices and handed some key documents to the farmers. Ferrous iron concentration in the soil of Moussodougou can reach 3000 mg/l in many farm plots with acidity as severe as pH 4. Since its incorporation into the soil was found to induce the growth of iron reducing bacteria activity, and given the positive conservation impact of organic matter in lightening the soil structure,  the  project advised the farmers to reduce its use but not to eliminate it completely. In parallel, farmers would have to use the complex NPK as in Tiefora, according to the norms of IN.ERA, but combine it with a careful erection of plot bunds to make the mineral element more available for the rice. Due to the fact that the current single irrigation season during the year in Moussodougou is an aggravating factor of iron toxicity, the project also introduced to the  farmers association its ongoing work of developing sprinkler irrigation from groundwater during the dry season. Finally, the project handed to the farmers’ association the same set of documents as in Tiefora, but related to the valley bottom of Moussodougou.


    Other social impacts


    In an ultimate effort to share the insights gained about the iron toxicity alleviation process, this research project produced and uploaded onto the social media YouTube several useful videos. The 15 videos uploaded and accessible for everybody, deal with areas as varied as hydrometrics, microbiology, geochemistry and small scale water saving irrigation equipment assembling at village level (without electricity). Many of these videos were very appreciated by the audience. For example, the video of "Innovative irrigation systems in Sub-Saharan Africa (French)" has been viewed/downloaded 500 times/month. Similarly, the video "How to take a sample of disturbed soil or resting in soil immersed at different depths (English)", was viewed/downloaded some 45 times/month. These two videos were classified "creative common" due to their high potential appropriation by third party video productions. Hence, it is expected that the project will have an even higher social impact in the coming months or years.


    The impact of wood biochar as a soil amendment in aerobic rice systems of the Brazilian Savannah
    Carvalho, M.T.M. - \ 2015
    Wageningen University. Promotor(en): Holger Meinke, co-promotor(en): Lammert Bastiaans; Pepijn van Oort; A.B. Heinemann. - Wageningen : Wageningen University - ISBN 9789462572522 - 160
    houtskool - grondverbeteraars - oryza sativa - rijst - landbouwplantenteelt - bodemvruchtbaarheid - stikstofoxide - savannegronden - brazilië - charcoal - soil amendments - oryza sativa - rice - crop husbandry - soil fertility - nitric oxide - savanna soils - brazil


    Keywords: tropical Savannah, biochar, soil fertility, aerobic rice, grain yield, N2O emission

    Márcia Thaís de Melo Carvalho (2015). The impact of wood biochar as a soil amendment in aerobic rice systems of the Brazilian Savannah. PhD thesis, Wageningen University, The Netherlands, with summaries in English, Dutch and Portuguese, 160 pp.

    Rice is a staple food for 3 billion people in the world. In Brazil, rice is a traditional staple food mostly cultivated by smallholder farmers. Rice is better adapted to soil types and climate conditions of the Brazilian tropical Savannah than crops like corn and soybean. However, environmental and socio-economic constraints such as the variable rainfall and the limited access to mineral fertilization is a challenge for sustainable aerobic rice production in Brazil. Yields can vary from 1 to 5 Mg ha-1. In this context, the use of agronomic techniques able to improve soil properties seems a good option to increase quantity and stability of rice production. The use of biochar as a soil amendment represents one such option. Biochar is carbonized biomass, generally a by-product of bioenergy production from biomass. Its use in agricultural soils is inspired by the very fertile Terra Preta soils, which are a result of pre-Columbian human activity in the Amazon region. A key component of the fertility of Terra Preta soils is the high content of C, mostly present in form of pyrogenic C, result of carbonization of organic material. Pyrogenic C is also an important fraction of the soil organic matter present in the weathered soils of the Brazilian Savannah. These soils are mostly acidic, with low soil organic matter content, requiring liming and mineral fertilization if used for agriculture. The biochar tested in the current research is a by-product of charcoal production from eucalyptus wood via slow pyrolysis at 400-500 ○C. It is a porous material with a high C content and K, Ca and Mg availability, which make it a potentially suitable soil amendment for the low fertile soils of the Brazilian Savannah. We applied biochar in a sandy and a clay soil type of the Brazilian Central West region, where over 40% of the Brazilian total crop production is located. We investigated whether biochar amendment improves soil chemical and physical properties and how this in turn affects aerobic rice yields along four cropping seasons after a single biochar application. In both soil types, biochar decreased soil acidity up to 3.5 years after its application. On the clay soil, biochar application decreased the soil water retention capacity but increased the soil organic matter content. The effect of biochar on rice yields on the clay soil were either absent, negative or dependent on the amount of mineral N applied, as well as biochar-induced changes in soil properties, particularly soil water retention and soil organic matter. Most promising results were observed on the sandy soil, where biochar application increased the soil water retention capacity. On the sandy soil, first two seasons were drier than latter two seasons. Accordingly, effects of biochar on rice yields were divergent: the positive effects observed in the first two seasons were absent in subsequent seasons. During this study, weather conditions and rice blast infestations were factors that influenced the observed effects of biochar on rice yields. Further, biochar did not enhance N2O emissions on the clay soil. Based on these results wood biochar could be considered for use in farming systems of the Brazilian Savannah, particularly on sandy soils.

    Empowering breeding programs with new approaches to overcome constraints for selecting superior quality traits of rice
    Calingacion, M.N. - \ 2015
    Wageningen University. Promotor(en): Robert Hall; M.A. Fitzgerald, co-promotor(en): Roland Mumm. - Wageningen : Wageningen University - ISBN 9789462572188 - 198
    oryza sativa - rijst - rassen (planten) - cultivars - genetische diversiteit - gewaskwaliteit - aroma - geur en smaak - consumentenvoorkeuren - plantenveredeling - veredelingsprogramma's - oryza sativa - rice - varieties - cultivars - genetic diversity - crop quality - aroma - flavour - consumer preferences - plant breeding - breeding programmes

    Empowering breeding programs with new approaches to overcome constraints for selecting superior quality traits of rice

    Mariafe N. Calingacion

    Most rice breeding programs have focused on improving agronomic traits such as yield, while enhancing grain quality traits such as flavour and aroma, especially of non-fragrant rices, has not been given high priority. In this study, we utilised a multi-disciplinary approach to understand better quality traits of aroma and flavour in rice grains, and to determine whether good flavour in the grain could be combined with stress tolerant genotypes.

    To understand what factors drive rice preferences, an extensive survey among members of the International Network for Quality Rice who are local experts in grain quality evaluation programs in 25 countries was conducted (Chapter 2). The objective was to identify the grain quality characteristics of the popular rice varieties in each region. Eighteen combinations of size and shape of the grain, amylose content (AC), gelatinisation temperature (GT) and fragrance were identified. These trait combinations reveal the complexity of consumer preferences. The two most popular combinations both have long and slender grains, while one has low amylose, low GT and is aromatic, and the other has intermediate AC and intermediate GT and is non-aromatic. Further evaluation of varieties having the same combination of grain quality traits showed that consumers readily identify differences between these varieties. For example, BRS Primavera and IR64 that are popular in Brazil and in the Philippines, respectively, have the same combination of all 18 traits, however, panellists of sensory evaluation can easily perceive differences in aroma and flavour of BRS Primavera and IR64. This emphasises that the current tools we have available to assess rice quality are unable to capture all the quality traits consumers are looking for in rice.

    In Chapter 3, a novel multiplatform metabolomic and ionomic approach with genome-wide genotyping was utilised to investigate the effect of different nitrogen fertiliser regimes on the biochemical profile of three premium waxy rice varieties, Hom Nang Nouane (HNN), Kai Noi Leuanag (KNL) and Tha Sa No (TSN) from Lao PDR. The current tools used to phenotype grain quality such as GT, values from viscosity curves, and hardness and stickiness, were unable to differentiate between HNN, KNL and TSN either on the basis of nitrogen treatment nor genotype. However, metabolite profiling of metabolites and minerals followed by multivariate statistical methods readily separated the genotypes on each platform, and discriminatory compounds that were identified were relevant to consumers in terms of flavour, taste and nutrition. However, despite yield differences, nitrogen treatment did not significantly affect the overall metabolite and mineral profiles of the samples. Using 1536 single nucleotide polymorphism (SNP) loci, the Euclidean distance between each variety was calculated and compared to the distance between each variety for each metabolomic platform. Procrustes analysis was used to rotate and scale the variety mean scores on the metabolite principal components to give the best fit to the genetic principal coordinates. Comparing the triangles whereby each vertex of the triangle is a variety and the length of each side is equal to the scaled Euclidean distance, mineral elements, polar metabolites and volatile compounds all associate very well with the genetic distance between each variety. This study highlights that multiple metabolomic platforms are potential phenotyping tools to characterise rice quality in a comprehensive and efficient way, and in a way that provides data that is relevant to consumers.

    To gain insights on the influence of water availability to the metabolomic profile of drought tolerant rice, two contrasting varieties, Apo and IR64, and a mapping population derived from them were extensively characterised in Chapters 4 and 5. Apo is drought tolerant but has unacceptable grain quality while IR64 is drought susceptible with premium grain quality. Apo and IR64 were grown under irrigated and drought conditions. Yield of Apo from both water conditions was higher than yield of IR64 under the same conditions. Moreover, metabolite profiling and sensory analysis showed that grains of Apo were not affected by drought conditions i.e. panellists perceived no difference in the aroma of Apo from both conditions and Principal Components Analysis (PCA) of the volatiles showed one cluster of Apo from both conditions. However, grains of IR64 formed two clusters based on water condition in the PCA and panellists were able to perceive ‘water-like metallic’ aroma in IR64 that was grown under drought conditions but this was not detected in grains from the irrigated treatment. This suggests that response to water stress in the metabolomic profile of the grain is variety dependent.

    In Chapter 5, a mapping population derived from Apo and IR64 was grown, with the parents, under irrigated and drought conditions. The yield of more than half of the population was higher than the yield of Apo and IR64 under both irrigated and drought conditions; this indicates significant transgressive segregation. Using a dense linkage map based on genotyping by sequencing data, quantitative trait loci (QTL) analysis of drought stress identified one major QTL on chromosome 3 that is likely to be qDTY3.1 which was previously detected in a population derived from Apo as the drought tolerant parent. All the lines of the population carrying this QTL showed significantly higher yield under drought than those without it, indicating the potential importance of this QTL in drought tolerance.

    Metabolite profiling and sensory analysis were also conducted in the grains of the population. More than a hundred volatiles were detected in the headspace of rice samples and PC1 and PC2 explained 55.6% of the variation in the metabolite profiles with many of the lines clustering in between the Apo and IR64 parent values. Six novel metabolite QTLs for volatile compounds were identified - 1 QTL was detected in chromosome 1 for 3,7-dimethyl-octen-1-ol, 1 QTL for hexanol in chromosome 2, and 4 QTLs for pentanol, hexanol, hexanal, and heptanone in chromosome 3. Interestingly, three lines were observed by the panellists to have similar aroma as IR64 while four lines were observed to have similar aroma as that perceived in Apo. Lines 20, 164 and 28 were perceived by the panellists to have high levels of corn, dairy and sweet aromatic features. Moreover, the yield of these 3 lines under both irrigated and drought conditions was similar to that of the Apo parent under the same conditions with Line 28 yielding the highest under drought and has the QTL associated with yield under drought on chromosome 3.

    Finally, the potential of metabolomics as a phenotyping tool in characterising grain quality is further highlighted in Chapter 6. Combining metabolomics with high throughput genotyping and sensory analysis offers new breadth of approach in understanding grain quality of rice. Three lines identified that carry IR64 quality along with high yield in both irrigation and drought, are recommended to enter a rice breeding program at the stage of advanced replicated and multi-location testing. By using advanced tools of phenotyping and genotyping, with validation by sensory panels, these three advanced lines have been selected in just three years.

    Prof. Justus Wesseler over overheidsingrijpen bij nieuwe biotechnologische ontwikkelingen
    Wesseler, J.H.H. - \ 2014
    Wageningen UR
    genetische modificatie - transgene planten - transgene organismen - biotechnologie - schade - rijst - india - economische aspecten - genetic engineering - transgenic plants - transgenic organisms - biotechnology - damage - rice - economic aspects
    Overheidsregels rond biotechnologie en genetisch gemodificeerde gewassen leiden vaak tot substantieel hoge investeringskosten. Die hebben weer een lager niveau van productontwikkeling tot gevolg en een concentratie in de industrie, een herschikking van onderzoeksprioriteiten en een verschuiving van onderzoek en ontwikkeling naar landen met minder stringente regelgeving. Die trend leidde zelfs tot schade aan duurzame ontwikkeling uit oogpunt van milieu en volksgezondheid.
    Socio-economic impacts and determinants of parasitic weed infestation in rainfed rice systems of sub-Saharan Africa
    N'cho, A.S. - \ 2014
    Wageningen University. Promotor(en): Alfons Oude Lansink, co-promotor(en): Monique Mourits; J. Rodenburg. - Wageningen : Wageningen University - ISBN 9789462571266 - 160
    rijst - agrarische productiesystemen - gewasproductie - onkruiden - parasitaire onkruiden - striga hermonthica - striga asiatica - controle - onkruidbestrijding - regenafhankelijke landbouw - economische impact - sociale factoren - besluitvorming - boeren - afrika ten zuiden van de sahara - benin - ivoorkust - tanzania - rice - agricultural production systems - crop production - weeds - parasitic weeds - striga hermonthica - striga asiatica - control - weed control - rainfed agriculture - economic impact - social factors - decision making - farmers - africa south of sahara - benin - cote d'ivoire - tanzania

    Keywords: rice; weed; weed management practices, adoption, impact, parasitic weeds; Rhamphicarpa fistulosa; Striga asiatica; Striga hermonthica, double hurdle model; multivariate probit, productivity, stochastic frontier analysis, data envelopment analysis, directional distance function, sub-Saharan Africa, Benin, Cote d’Ivoire, Tanzania.

    Socio-economic impacts and determinants of parasitic weed infestation in

    rainfed rice systems of sub-Saharan Africa

    Simon A. N’cho


    Rice is an important strategic crop for food security in sub-Saharan Africa. However, its production is constrained by many biotic and abiotic stress. In rainfed rice systems, weeds and particularly parasitic weeds are among the most damaging constraints. The objective of this thesis was to identify factors affecting infestation of rice farms by parasitic weeds and to assess the economic and social impact of parasitic weeds on primary producers of rainfed rice systems in order to provide guidance for decision-making for rice farmers and policymakers aiming at developing strategies for coping with parasitic weeds. To achieve this objective, we first explored biophysical characters of the rice growing environment, farmers’ management practices, and socio-economic characteristics that affect the infestation of rice fields by parasitic weeds (PWs) and farmers’ ability to cope with the problem. A double hurdle model was used to analyses simultaneously the likelihood of occurrence and the severity of infestation of the PW. The findings suggest that farmers can cope with the PW as long as they are aware of the problem provided they have a good access and management capacity of production resources. Next, we examined weed management practices (WMPs) currently available to farmers and how PW infestation affect their choices for specific combinations of WMPs using a multivariate probit model. Findings indicate that farmers are more likely to adopt improved weed management practices or combined more WMPs when their fields are infested by PWs. Species-specific and country-specific approaches and technologies are require to address the PW problem. Then, we assessed the impact of parasitic weeds infestation on farmers’ productivity and examined how this problem and managerial factors prevent farmers from achieving optimal technical efficiency levels using a stochastic frontier analysis (SFA). PWs induce productivity losses ranging from 21% to 50%. Farmers seem to cope with PW through learning from experiencing PW problem. Finally, we estimated weeding labour inefficiencies using a Data Envelopment Analysis (DEA) with directional input distance function and a single truncated bootstrap regression to identify sources of inefficiencies. Results suggest that, farmers can save substantial (58% – 69%) weeding labour without reducing rice production. No evidence was found that the currently used manual weeding modalities were able to manage parasitic weeds efficiently. The main finding of this thesis is that in sub-Saharan Africa, PWs infestation has a negative impact on rainfed rice systems’ productivity and the use of production resources. However, these impacts can be reduced if farmers have a good access to production resources and manage them efficiently.

    Chinese scenarios for groundwater leaching and aquatice exposure : development of scenarios for environmental risk assessment procedures of pesticides in China
    Horst, M.M.S. ter; Wipfler, E.L. ; Adriaanse, P.I. ; Boesten, J.J.T.I. ; Fait, G. ; Li, W. ; Tao, C. - \ 2014
    Wageningen : Alterra, Wageningen-UR (Alterra-rapport 2559) - 164
    grondwater - pesticiden - uitspoelen - risicoschatting - modellen - oppervlaktewater - blootstelling - rijstvelden - rijst - china - groundwater - pesticides - leaching - risk assessment - models - surface water - exposure - rice fields - rice - china
    Within the frame work of the Sino-Dutch Pesticide Environment Risk Assessment Project (PERAP) and as part of the Chinese environmental ris assessment procedures models and scenarions were developed to estimate concentrations of Plant Protection Product (PPP) leaching to the groundwater and to estimate PPP concentrations in Chinese small surface waters. Protection goals considering groundwater and surface water were defined in detail. Realistic worst-case groundwater scenario's and surface water scenarios were defined to be used in respectively a Tier 1 leaching assessment of PPP a Tier 1 assesment of the risks of PPP to aquatic ecosystems in China. Data on soil, weather, crops, irrigation and Agricultural practices were gathered for both scenario definitions. Existing models PEARL and TOXSWA were modified and parameterised for the scenarions defined.
    Biosynthesis, regulation and biological role of strigolactones in rice
    Moura Luis Cardoso, C.S. De - \ 2014
    Wageningen University. Promotor(en): Harro Bouwmeester, co-promotor(en): Carolien Ruyter-Spira. - Wageningen : Wageningen University - ISBN 9789462570917 - 166
    oryza sativa - rijst - striga - parasitaire planten - rizosfeer - lactonen - gigaspora rosea - biosynthese - oryza sativa - rice - striga - parasitic plants - rhizosphere - lactones - gigaspora rosea - biosynthesis

    In her thesis Catarina Cardoso studied strigolactone biosynthesis in rice. Strigolactones are multifunctional compounds produced by plants. They are plant hormones that regulate plant architecture, but in addition plants release strigolactones into the soil to communicate and initiate beneficial symbiosis with arbuscular mycorrhizal (AM) fungi. Parasitic plants of the genera Striga, Orobanche and Phelipanche take advantage of this communication to also recognize their hosts and infest them. These parasites infect crops and cause significant economic losses in Mediterranean regions and especially in Sub Saharan Africa where they put food security at risk. Catarina found there is large variation in strigolactone biosynthesis between the two major rice groups (indica and japonica) and located the genes responsible for this. She also showed that the different strigolactones produced by rice have a differential impact on AM fungi and seeds of parasitic plants. These findings suggest that it is possible to select crop varieties that can interact with AM fungi, without inducing parasitism. The knowledge generated in this study can contribute to the urgent need to control the worldwide parasitic weed problems. At the same time strigolactones also control plant development and the results of this study may resuylt in tools to develop better yielding and sustainable crops.

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