Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

    We have a manual that explains all the features 

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GeneNetwork: framework for web-based genetics
Sloan, Zachary ; Arends, Danny ; Broman, Karl W. ; Centeno, Arthur ; Furlotte, Nicholas ; Nijveen, H. ; Yan, Lei ; Zhou, Xiang ; Williams, Robert W. ; Prins, Pjotr - \ 2016
The Journal of Open Source Software 1 (2016)2. - 3 p.
GeneNetwork (GN) is a free and open source (FOSS) framework for web-based genetics that can be deployed anywhere. GN allows biologists to upload high-throughput experimental data, such as expression data from microarrays and RNA-seq, and also `classic' phenotypes, such as disease phenotypes. These phenotypes can be mapped interactively against genotypes using embedded tools, such as R/QTL (Arends et al. 2010) mapping, interval mapping for model organisms and pylmm; an implementation of FaST-LMM (Lippert et al. 2011) which is more suitable for human populations and outbred crosses, such as the mouse diversity outcross. Interactive D3 graphics are included from R/qtlcharts and presentation-ready figures can be generated. Recently we have added functionality for phenotype correlation (Wang et al. 2016) and network analysis (Langfelder and Horvath 2008).
Experiencias Y aprendizajes del desarollo de variedades de frijol de manera participativa en el norte de nicaragua
Almekinders, C.J.M. ; Molina-Centeno, J. ; Herrera-Torrez, R. ; Merlo-Olivera, S.L. ; Gonzalez-Suarez, J.M. ; Garcia-Carrasco, J. - \ 2006
Agronomia mesoamericana 17 (2006)3. - ISSN 1021-7444 - p. 327 - 336.
RAWOO Evaluation Report. Rapport voor de Raad voor het Wetenschappelijk Onderzoek in het Kader van Ontwikkelingssamenwerking
Röling, N. ; Broerse, J. ; Hesseling, G. ; Centeno, J. ; Reichel Dormatoff, J. - \ 2001
Den Haag : Unknown Publisher - 37 p.
A model for photothermal responses of flowering in rice. I. Model description and parameterization.
Yin, X. ; Kropff, M.J. ; Horie, T. ; Nakagawa, H. ; Centeno, H.G.S. ; Zhu, D. ; Goudriaan, J. - \ 1997
Field Crops Research 51 (1997)3. - ISSN 0378-4290 - p. 189 - 200.
Most models that predict crop development based on temperature and photoperiod ignore critical changes in photothermal responses during crop ontogeny. A new, detailed model was developed to predict development to flowering in rice (Oryza sativa L.), based on the Beta function which is commonly used for skewed probability density functions in statistics. As the model accounts for different photothermal responses of three successive phases during preflowering ontogeny, it was referred to as the three-stage Beta model. The model was parameterized for 17 rice cultivars using data of two controlled-environment experiments. Model parameters which do not vary strongly among cultivars and parameters which can be estimated from values of other parameters were identified. This analysis reduced the number of parameters to be estimated to five. The parameters from the controlled-environment experiments were used to predict rice development as observed from an independent three-location field experiment with 12 cultivars. The model accurately predicted varietal and locational variation in rice flowering date.
The rice simulation model SIMRIW and its testing
Horie, T. ; Nakagawa, H.N. ; Centeno, H.G.S. ; Kropff, M.J. - \ 1995
In: Modeling the impact of climate change on rice production in Asia / Matthews, R.B., Kropff, M.J., Bachelet, D., van Laar, H.H., - p. 95 - 139.
A regional evaluation of the effect of future climate change on rice production in Asia
Matthews, R.B. ; Horie, T. ; Kropff, M.J. ; Bachelet, D. ; Centeno, H.G. ; Shin, J.C. ; Mohandass, S. ; Singh, S. ; Zhu Defeng, ; Moon Hee Lee, - \ 1995
In: Modelling the impact of climate change on rice production in Asia / Matthews, R.B., Kropff, M.J., Bachelet, D., van Laar, H.H., - p. 95 - 139.
Predicting the yield potential of rice in different environments
Kropff, M.J. ; Williams, R.J. ; Horie, R. ; Angus, J.F. ; Singh, U. ; Centeno, H.G. ; Cassman, K.G. - \ 1995
In: Temperate rice-achievements and potential. Proceedings of the temperate rice conference, Yanco, Australia, February 1994 / Humphreys, E., Murray, E.A., Clampett, W.S., Lewinn, L.G., - p. 657 - 664.
The rice weather data base
Centeno, H.G.S. ; Aclan, A.P. ; Balbarez, A.D. ; Pascual, Z.P. ; Penning de Vries, F.W.T. ; Kropff, M.J. - \ 1995
In: Effect of climate change on rice crops / Kropff, M.J., Wallingford, UK : C.A.B. International - p. 9 - 26.
Modeling the impact of climate change on rice production in Asia.
Matthews, R.B. ; Kropff, M.J. ; Bachelet, D. ; Horie, T. ; Lee, M.H. ; Centeno, H.G.S. ; Shin, J.C. ; Mohandass, S. ; Singh, S. ; Defeng, Z. - \ 1995
In: Climate change and rice, S. Peng et al. (eds.). Springer-Verlag, Berlin and International Rice Research Institute, Manila - p. 314 - 325.
Effect of anticipated change in global environment on rice yields in Japan.
Horie, T. ; Kropff, M.J. ; Centeno, H.G. ; Nakagawa, H. ; Nakano, J. ; Kim, H.Y. ; Ohnishi, M. - \ 1995
In: Climate change and rice, S. Peng et al. (eds.). Springer-Verlag, Berlin and International Rice Research Institute, Manila - p. 291 - 302.
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