Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data
Wittenburg, Peter ; Sustkova, Hana Pergl ; Montesanti, Annalisa ; Bloemers, Margreet ; Waard, S.H. de; Musen, Mark A. ; Graybeal, John ; Hettne, Kristina M. ; Jacobsen, Annika ; Pergl, Robert ; Hooft, Rob W.W. ; Staiger, Christine ; Gelder, Celia W.G. van; Knijnenburg, Sebastiaan L. ; Arkel, A.C. van; Meerman, Bert ; Wilkinson, Mark D. ; Sansone, S.A. ; Rocca-Serra, Philippe ; McQuilton, Peter ; Gonzalez-Beltran, Alejandra N. ; Aben, G.J.C. ; Henning, P. ; Menezes Alencar, Maria Simone de; Ribeiro, C. ; Silva, C.R.L. ; Sayao, Luis ; Sales, Luana ; Veiga, Viviane ; Lima, Jefferson ; Dib, Simone ; Xavier dos Santos, Paula dos; Murtinho, R. ; Tendel, Jakob ; Schaap, B.F. ; Brouwer, P.M. ; Gavai, A.K. ; Bouzembrak, Yamine ; Marvin, Hans J.P. ; Mons, Albert ; Kuhn, Tobias ; Gambardella, A.A. ; Miranda Azevedo, Ricardo de; Muhonen, Vesa ; Naald, Mira van der; Smit, N.W. ; Buys, M.J. ; Bruin, Taco F. de; Schoots, Fieke ; Goodson, H.J.E. ; Rzepa, Henry S. ; Jeffery, Keith G. ; Shanahan, Hugh P. ; Axton, M. ; Tkachenko, Veniamin ; Deslattes Maya, Anne ; Meyers, Natalie ; Conlon, Michael ; Haak, Laurel L. ; Schultes, Erik - \ 2019
arXiv - 13 p.
There is a growing acknowledgement in the scientific community of the importance of making experimental data machine findable, accessible, interoperable, and reusable (FAIR). Recognizing that high quality metadata are essential to make datasets FAIR, members of the GO FAIR Initiative and the Research Data Alliance (RDA) have initiated a series of workshops to encourage the creation of Metadata for Machines (M4M), enabling any self-identified stakeholder to define and promote the reuse of standardized, comprehensive machine-actionable metadata. The funders of scientific research recognize that they have an important role to play in ensuring that experimental results are FAIR, and that high quality metadata and careful planning for FAIR data stewardship are central to these goals. We describe the outcome of a recent M4M workshop that has led to a pilot programme involving two national science funders, the Health Research Board of Ireland (HRB) and the Netherlands Organisation for Health Research and Development (ZonMW). These funding organizations will explore new technologies to define at the time that a request for proposals is issued the minimal set of machine-actionable metadata that they would like investigators to use to annotate their datasets, to enable investigators to create such metadata to help make their data FAIR, and to develop data-stewardship plans that ensure that experimental data will be managed appropriately abiding by the FAIR principles. The FAIR Funders design envisions a data-management workflow having seven essential stages, where solution providers are openly invited to participate. The initial pilot programme will launch using existing computer-based tools of those who attended the M4M Workshop.
Addendum: The FAIR Guiding Principles for scientific data management and stewardship
Wilkinson, Mark D. ; Dumontier, Michel ; Aalbersberg, Ijsbrand Jan ; Appleton, Gabrielle ; Axton, Myles ; Baak, Arie ; Blomberg, Niklas ; Boiten, Jan Willem ; Silva Santos, Luiz Bonino Da; Bourne, Philip E. ; Bouwman, Jildau ; Brookes, Anthony J. ; Clark, Tim ; Crosas, Mercè ; Dillo, Ingrid ; Dumon, Olivier ; Edmunds, Scott ; Evelo, Chris T. ; Finkers, Richard ; Gonzalez-Beltran, Alejandra ; Gray, Alasdair J.G. ; Groth, Paul ; Goble, Carole ; Grethe, Jeffrey S. ; Heringa, Jaap ; Hoen, Peter A.C. 't; Hooft, Rob ; Kuhn, Tobias ; Kok, Ruben ; Kok, Joost ; Lusher, Scott J. ; Martone, Maryann E. ; Mons, Albert ; Packer, Abel L. ; Persson, Bengt ; Rocca-Serra, Philippe ; Roos, Marco ; Schaik, Rene van; Sansone, Susanna Assunta ; Schultes, Erik ; Sengstag, Thierry ; Slater, Ted ; Strawn, George ; Swertz, Morris A. ; Thompson, Mark ; Lei, Johan van der; Mulligen, Erik van; Velterop, Jan ; Waagmeester, Andra ; Wittenburg, Peter ; Wolstencroft, Katherine ; Zhao, Jun ; Mons, Barend - \ 2019
Scientific Data 6 (2019). - ISSN 2052-4463

Praktijkopbrengst snijmaïs loopt 25 jaar achter op rassenproeven
Schils, Rene - \ 2018
Fosfaatplafond ook cruciaal voor Kaderrichtlijn Water : melkveehouderij goed op weg naar realisatie Nitraatrichtlijn
Velthof, Gerard - \ 2016

De melkveesector staat een zeer ingrijpend stelsel van fosfaatrechten te wachten. Maar de meeste melkveebedrijven voldoen al aan het oorspronkelijke doel van de Nitraatrichtlijn. Hoe zit dat? Gerard Velthof, secretaris van de adviescommissie, legt uit dat het fosfaatplafond óók een cruciale rol speelt bij de Kaderrichtlijn Water.

'Nieuw'voedergewas goed voor melkproductie
Pellikaan, Wilbert - \ 2016
Quantification of the smoking-associated cancer risk with rate advancement periods : Meta-analysis of individual participant data from cohorts of the CHANCES consortium
Ordóñez-Mena, José Manuel ; Schöttker, Ben ; Mons, Ute ; Jenab, Mazda ; Freisling, Heinz ; Bueno-de-Mesquita, Bas ; O'Doherty, Mark G. ; Scott, Angela ; Kee, Frank ; Stricker, Bruno H. ; Hofman, Albert ; Keyser, Catherine E. de; Ruiter, Rikje ; Söderberg, Stefan ; Jousilahti, Pekka ; Kuulasmaa, Kari ; Freedman, Neal D. ; Wilsgaard, Tom ; Groot, Lisette C.P.G.M. de; Kampman, Ellen ; Håkansson, Niclas ; Orsini, Nicola ; Wolk, Alicja ; Nilsson, Lena Maria ; Tjønneland, Anne ; Pajak, Andrzej ; Malyutina, Sofia ; Kubínová, Růžena ; Tamosiunas, Abdonas ; Bobak, Martin ; Katsoulis, Michail ; Orfanos, Philippos ; Boffetta, Paolo ; Trichopoulou, Antonia ; Brenner, Hermann - \ 2016
BMC Medicine 14 (2016)1. - ISSN 1741-7015
Cancer - Cohort - Incidence - Meta-analysis - Mortality - Smoking

Background: Smoking is the most important individual risk factor for many cancer sites but its association with breast and prostate cancer is not entirely clear. Rate advancement periods (RAPs) may enhance communication of smoking related risk to the general population. Thus, we estimated RAPs for the association of smoking exposure (smoking status, time since smoking cessation, smoking intensity, and duration) with total and site-specific (lung, breast, colorectal, prostate, gastric, head and neck, and pancreatic) cancer incidence and mortality. Methods: This is a meta-analysis of 19 population-based prospective cohort studies with individual participant data for 897,021 European and American adults. For each cohort we calculated hazard ratios (HRs) for the association of smoking exposure with cancer outcomes using Cox regression adjusted for a common set of the most important potential confounding variables. RAPs (in years) were calculated as the ratio of the logarithms of the HRs for a given smoking exposure variable and age. Meta-analyses were employed to summarize cohort-specific HRs and RAPs. Results: Overall, 140,205 subjects had a first incident cancer, and 53,164 died from cancer, during an average follow-up of 12 years. Current smoking advanced the overall risk of developing and dying from cancer by eight and ten years, respectively, compared with never smokers. The greatest advancements in cancer risk and mortality were seen for lung cancer and the least for breast cancer. Smoking cessation was statistically significantly associated with delays in the risk of cancer development and mortality compared with continued smoking. Conclusions: This investigation shows that smoking, even among older adults, considerably advances, and cessation delays, the risk of developing and dying from cancer. These findings may be helpful in more effectively communicating the harmful effects of smoking and the beneficial effect of smoking cessation.

The FAIR Guiding Principles for scientific data management and stewardship : Comment
Wilkinson, Mark D. ; Dumontier, Michel ; Aalbersberg, Ijsbrand Jan ; Appleton, Gabrielle ; Axton, Myles ; Baak, Arie ; Blomberg, Niklas ; Boiten, Jan Willem ; Silva Santos, Luiz Bonino Da; Bourne, Philip E. ; Bouwman, Jildau ; Brookes, Anthony J. ; Clark, Tim ; Crosas, Mercè ; Dillo, Ingrid ; Dumon, Olivier ; Edmunds, Scott ; Evelo, Chris T. ; Finkers, Richard ; Gonzalez-Beltran, Alejandra ; Gray, Alasdair J.G. ; Groth, Paul ; Goble, Carole ; Grethe, Jeffrey S. ; Heringa, Jaap ; Hoen, Peter A.C. 't; Hooft, Rob ; Kuhn, Tobias ; Kok, Ruben ; Kok, Joost ; Lusher, Scott J. ; Martone, Maryann E. ; Mons, Albert ; Packer, Abel L. ; Persson, Bengt ; Rocca-Serra, Philippe ; Roos, Marco ; Schaik, Rene van; Sansone, Susanna Assunta ; Schultes, Erik ; Sengstag, Thierry ; Slater, Ted ; Strawn, George ; Swertz, Morris A. ; Thompson, Mark ; Lei, Johan van der; Mulligen, Erik van; Velterop, Jan ; Waagmeester, Andra ; Wittenburg, Peter ; Wolstencroft, Katherine ; Zhao, Jun ; Mons, Barend - \ 2016
Scientific Data 3 (2016). - ISSN 2052-4463

There is an urgent need to improve the infrastructure supporting the reuse of scholarly data. A diverse set of stakeholders-representing academia, industry, funding agencies, and scholarly publishers-have come together to design and jointly endorse a concise and measureable set of principles that we refer to as the FAIR Data Principles. The intent is that these may act as a guideline for those wishing to enhance the reusability of their data holdings. Distinct from peer initiatives that focus on the human scholar, the FAIR Principles put specific emphasis on enhancing the ability of machines to automatically find and use the data, in addition to supporting its reuse by individuals. This Comment is the first formal publication of the FAIR Principles, and includes the rationale behind them, and some exemplar implementations in the community.

Smoking and All-cause Mortality in Older Adults: Results From the CHANCES Consortium
Müezzinler, A. ; Mons, U. ; Gellert, C. ; Schöttker, B. ; Jansen, G.H.E. ; Kee, F. ; Groot, C.P.G.M. de; Jankovic, N. - \ 2015
American Journal of Preventive Medicine 49 (2015)5. - ISSN 0749-3797 - p. e53 - e63.
Introduction Smoking is known to be a major cause of death among middle-aged adults, but evidence on its impact and the benefits of smoking cessation among older adults has remained limited. Therefore, we aimed to estimate the influence of smoking and smoking cessation on all-cause mortality in people aged =60 years. Methods Relative mortality and mortality rate advancement periods (RAPs) were estimated by Cox proportional hazards models for the population-based prospective cohort studies from Europe and the U.S. (CHANCES [Consortium on Health and Ageing: Network of Cohorts in Europe and the U.S.]), and subsequently pooled by individual participant meta-analysis. Statistical analyses were performed from June 2013 to March 2014. Results A total of 489,056 participants aged =60 years at baseline from 22 population-based cohort studies were included. Overall, 99,298 deaths were recorded. Current smokers had 2-fold and former smokers had 1.3-fold increased mortality compared with never smokers. These increases in mortality translated to RAPs of 6.4 (95% CI=4.8, 7.9) and 2.4 (95% CI=1.5, 3.4) years, respectively. A clear positive dose-response relationship was observed between number of currently smoked cigarettes and mortality. For former smokers, excess mortality and RAPs decreased with time since cessation, with RAPs of 3.9 (95% CI=3.0, 4.7), 2.7 (95% CI=1.8, 3.6), and 0.7 (95% CI=0.2, 1.1) for those who had quit
Impact of smoking and smoking cessation on cardiovascular events and mortality among older adults: meta-analysis of individual participant data from prospective cohort studies of the CHANCES consortium
Mons, U. ; Müezzinler, A. ; Gellert, C. ; Schöttker, B. ; Abnet, C.C. ; Bobak, M. ; Groot, C.P.G.M. de; Freedman, N.D. ; Jansen, E. ; Kee, F. ; Kromhout, D. ; Kuulasmaa, K. ; Laatikainen, T. - \ 2015
BMJ: British Medical Journal 350 (2015). - ISSN 0959-8138 - 12 p.
rate advancement periods - myocardial-infarction - cigarette-smoking - united-states - risk-factors - health - disease - population - stroke - women
Objective - To investigate the impact of smoking and smoking cessation on cardiovascular mortality, acute coronary events, and stroke events in people aged 60 and older, and to calculate and report risk advancement periods for cardiovascular mortality in addition to traditional epidemiological relative risk measures. Design - Individual participant meta-analysis using data from 25 cohorts participating in the CHANCES consortium. Data were harmonised, analysed separately employing Cox proportional hazard regression models, and combined by meta-analysis. Results - Overall, 503¿905 participants aged 60 and older were included in this study, of whom 37¿952 died from cardiovascular disease. Random effects meta-analysis of the association of smoking status with cardiovascular mortality yielded a summary hazard ratio of 2.07 (95% CI 1.82 to 2.36) for current smokers and 1.37 (1.25 to 1.49) for former smokers compared with never smokers. Corresponding summary estimates for risk advancement periods were 5.50 years (4.25 to 6.75) for current smokers and 2.16 years (1.38 to 2.39) for former smokers. The excess risk in smokers increased with cigarette consumption in a dose-response manner, and decreased continuously with time since smoking cessation in former smokers. Relative risk estimates for acute coronary events and for stroke events were somewhat lower than for cardiovascular mortality, but patterns were similar. Conclusions - Our study corroborates and expands evidence from previous studies in showing that smoking is a strong independent risk factor of cardiovascular events and mortality even at older age, advancing cardiovascular mortality by more than five years, and demonstrating that smoking cessation in these age groups is still beneficial in reducing the excess risk.
Teelt eigen krachtvoer meestal niet rendabel: 'Ga niet hobbyen met dure hectares'
Livestock Research, - \ 2013
dairy farming - force feeding - costs - dairy cattle nutrition - forage quality
KWIN Veehouderij bestaat 25 jaar
Vermeij, Izak - \ 2013
livestock farming - information systems - statistical data - quantitative analysis - agricultural economics - business economics - farm budgeting - farm comparisons - agricultural prices
Nitraat voeren voor lagere methaanproductie koe
Livestock Research, - \ 2013
Proefbedrijf De Marke is gestart met het voeren van (calcium)nitraat om de methaanemissie uit voerfermentatie te verminderen. Nitraat voeren is bewezen effectief.
Eerste stap voerspoor gehaald
Livestock Research, - \ 2013
Beïnvloeden van mineralenstromen
Livestock Research, - \ 2013
Dierenartsen buigen zich over derogatierantsoen
Vegte, Zwier van der - \ 2013
dairy farming - dairy cattle nutrition - maize - zea mays - fertilizer application - nitrogen - phosphorus - manure policy - environmental policy - feed formulation - veterinarians - veterinary practice
Mestnormen worden te krap : Streven naar evenwichtsbemesting voor stikstof
Livestock Research, - \ 2012
dairy farming - cattle feeding - silage quality - protein content - fertilizer application
Veehouder Groeneveld: weiden van koeien spaart veel krachtvoer uit
Mons, G. - \ 2007
Agrarisch dagblad (2007). - ISSN 1380-6335
Beweiden kost per weidegang 11 minuten minder tijd dan opstallen
Mons, G. - \ 2007
Agrarisch dagblad (2007). - ISSN 1380-6335
Advies KNMvD: bij opstallen de weide zo goed mogelijk nabootsen
Mons, G. - \ 2007
Agrarisch dagblad (2007). - ISSN 1380-6335
Small things do matter! Root nematodes affect resistance against shoot feeding cabbage aphids
Dam, N.M. van; Raaijmakers, C.E. ; Wagenaar, R. ; Mons, I. ; Tytgat, T.O.G. ; Vet, L.E.M. ; Putten, W.H. van der - \ 2007
In: Abstract book of the Joint International Workshop on PR-proteins and induced resistance against pathogens and insects, Doorn, The Netherlands, 10-14 May 2007. - - p. 46 - 46.
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