Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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    Publisher Correction : Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo
    Palovaara, Joakim ; Saiga, Shunsuke ; Wendrich, Jos R. ; ‘t Wout Hofland, Nicole van; Schayck, J.P. van; Hater, Friederike ; Mutte, Sumanth ; Sjollema, Jouke ; Boekschoten, Mark ; Hooiveld, Guido J. ; Weijers, Dolf - \ 2018
    Nature Plants 4 (2018). - ISSN 2055-026X
    In the version of this Resource originally published, the author information was incorrect. Jos R. Wendrich should have had a present address: Department of Plant Biotechnology and Bioinformatics and VIB Center for Plant Systems Biology, Ghent University, Technologiepark 927, 9052 Ghent, Belgium. Mark Boekschoten and Guido J. Hooiveld should have been affiliated to the Nutrition, Metabolism and Genomics Group, Division of Human Nutrition, Wageningen University, 6708 WE Wageningen, The Netherlands. In addition, the version of Supplementary Table 5 originally published with this Resource was not the intended final version and included inaccurate citations to the display items of the Resource, and the file format and extension did not match. These errors have now been corrected in all versions of the Resource.
    Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo
    Palovaara, Joakim ; Saiga, Shunsuke ; Wendrich, Jos R. ; 'T Wout Hofland, Nicole Van; Schayck, J.P. van; Hater, Friederike ; Mutte, Sumanth ; Sjollema, Jouke ; Boekschoten, Mark ; Hooiveld, Guido J. ; Weijers, Dolf - \ 2017
    Nature Plants 3 (2017)11. - ISSN 2055-026X - p. 894 - 904.
    During early plant embryogenesis, precursors for all major tissues and stem cells are formed. While several components of the regulatory framework are known, how cell fates are instructed by genome-wide transcriptional activity remains unanswered-in part because of difficulties in capturing transcriptome changes at cellular resolution. Here, we have adapted a two-component transgenic labelling system to purify cell-Type-specific nuclear RNA and generate a transcriptome atlas of early Arabidopsis embryo development, with a focus on root stem cell niche formation. We validated the dataset through gene expression analysis, and show that gene activity shifts in a spatio-Temporal manner, probably signifying transcriptional reprogramming, to induce developmental processes reflecting cell states and state transitions. This atlas provides the most comprehensive tissue-Snd cell-specific description of genome-wide gene activity in the early plant embryo, and serves as a valuable resource for understanding the genetic control of early plant development.
    Heterologous expression of Gaeumannomyces graminis lipoxygenase in Aspergillus nidulans
    Heshof, R. ; Schayck, J.P. van; Tamayo Ramos, J.A. ; Graaff, L.H. de - \ 2014
    AMB Express 4 (2014). - ISSN 2191-0855 - 6 p.
    niger - protein - biosynthesis - oxylipins - genes
    Aspergillus sp. contain ppo genes coding for Ppo enzymes that produce oxylipins from polyunsaturated fatty acids. These oxylipins function as signal molecules in sporulation and influence the asexual to sexual ratio of Aspergillus sp. Fungi like Aspergillus nidulans and Aspergillus niger contain just ppo genes where the human pathogenic Aspergillus flavus and Aspergillus fumigatus contain ppo genes as well as lipoxygenases. Lipoxygenases catalyze the synthesis of oxylipins and are hypothesized to be involved in quorum-sensing abilities and invading plant tissue. In this study we used A. nidulans WG505 as an expression host to heterologously express Gaeumannomyces graminis lipoxygenase. The presence of the recombinant LOX induced phenotypic changes in A. nidulans transformants. Also, a proteomic analysis of an A. nidulans LOX producing strain indicated that the heterologous protein was degraded before its glycosylation in the secretory pathway. We observed that the presence of LOX induced the specific production of aminopeptidase Y that possibly degrades the G. graminis lipoxygenase intercellularly. Also the presence of the protein thioredoxin reductase suggests that the G. graminis lipoxygenase is actively repressed in A. nidulans.
    Effects of house dust mite avoidance measures on Der p 1 concentrations and clinical conditions of mild adult housedustmite-allergic asthmatic patients, using no inhaled steroids
    Cloosterman, S. ; Schermer, T. ; Bijl-Hofland, I. ; Heide, S. van der; Brunekreef, B. ; Elshout, F. van den; Herwaarden, C. ; Schayck, C.P. - \ 1999
    Clinical and Experimental Allergy 29 (1999). - ISSN 0954-7894 - p. 1336 - 1346.
    Longitudinal changes in bronchial responsiveness associated with swine confinement dust exposure
    Vogelzang, P.F.J. ; Gulden, J.W.J. van der; Folgering, H. ; Heederik, D. ; Tielen, M.J.M. ; Schayck, C.P. van - \ 1998
    Journal of Occupational and Environmental Medicine 40 (1998). - ISSN 1076-2752 - p. 1048 - 1052.
    The effect of house dust mite ompermeable covers and an acaricide on der P I levels.
    Cloosterman, S. ; Hofland, I. ; Heide, S. van der; Brunekreef, B. ; Elshout, F. van den; Folgering, H. ; Schayck, C. van - \ 1998
    European Respiratory Journal 12 (1998). - ISSN 0903-1936 - p. 69S - 69S.
    Endotoxin exposure as a major determinant of lung function decline in pig farmers.
    Vogelzang, P.F.J. ; Gulden, J.W.J. van der; Folgering, H. ; Kolk, J.J. ; Heederik, D. ; Preller, L. ; Tielen, M.J.M. ; Schayck, C.P. van - \ 1998
    American Journal of Respiratory and Critical Care Medicine 157 (1998). - ISSN 1073-449X - p. 15 - 18.
    Bronchial hyperresponsiveness and exposure in pig farmers.
    Vogelzang, P.F.J. ; Gulden, J.W.J. van der; Preller, L. ; Tielen, M.J.M. ; Schayck, C.P. van; Folgering, H. - \ 1997
    International Archives of Occupational and Environmental Health 70 (1997). - ISSN 0340-0131 - p. 327 - 333.
    House dust mite avoidance measures improve peak flow and symptoms in patients with allergy but without asthma: A possible delay in the manifestation of clinical asthma?
    Cloosterman, S.G.M. ; Hofland, I.D. ; Lukassen, H.G.M. ; Wieringa, M.H. ; Folgering, H.Th.M. ; Heide, S. van der; Brunekreef, B. ; Schayck, C.P. van - \ 1997
    Journal of Allergy and Clinical Immunology 100 (1997). - ISSN 0091-6749 - p. 313 - 319.
    Respiratory morbidity in relationship to farm characteristics in swine confinement work: possible preventive measures.
    Vogelzang, P.F.J. ; Gulden, J.W.J. van der; Preller, L. ; Heederik, D. ; Tielen, M.J.M. ; Schayck, C.P. - \ 1996
    American Journal of Industrial Medicine 30 (1996). - ISSN 0271-3586 - p. 212 - 218.
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