Staff Publications

Staff Publications

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    'Staff publications' is the digital repository of Wageningen University & Research

    'Staff publications' contains references to publications authored by Wageningen University staff from 1976 onward.

    Publications authored by the staff of the Research Institutes are available from 1995 onwards.

    Full text documents are added when available. The database is updated daily and currently holds about 240,000 items, of which 72,000 in open access.

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    Component-resolved microarray analysis of IgE sensitization profiles to Culicoides recombinant allergens in horses with insect bite hypersensitivity
    Novotny, Ella N. ; White, Samuel J. ; Wilson, A.D. ; Stefánsdóttir, Sara B. ; Tijhaar, Edwin ; Jonsdóttir, Sigridur ; Frey, Rebekka ; Reiche, Dania ; Rose, Horst ; Rhyner, Claudio ; Schüpbach-Regula, Gertraud ; Torsteinsdóttir, Sigurbjörg ; Alcocer, Marcos ; Marti, Eliane - \ 2020
    Allergy (2020). - ISSN 0105-4538
    culicoides allergens - equine insect bite hypersensitivity - IgE - microarray

    Background: Allergy to bites of blood-sucking insects, including biting midges, can affect both human and veterinary patients. Horses are often suffering from an IgE-mediated allergic dermatitis caused by bites of midges (Culicoides spp). With the aim to improve allergen immunotherapy (AIT), numerous Culicoides allergens have been produced as recombinant (r-) proteins. This study aimed to test a comprehensive panel of differently expressed Culicoides r-allergens on a cohort of IBH-affected and control horses using an allergen microarray. Methods: IgE levels to 27 Culicoides r-allergens, including 8 previously unpublished allergens, of which 11 were expressed in more than one expression system, were determined in sera from 347 horses. ROC analyses were carried out, cut-offs selected using a specificity of 95% and seropositivity rates compared between horses affected with insect bite hypersensitivity (IBH) and control horses. The combination of r-allergens giving the best performing test was determined using logistic regression analysis. Results: Seropositivity was significantly higher in IBH horses compared with controls for 25 r-allergens. Nine Culicoides r-allergens were major allergens for IBH with seven of them binding IgE in sera from > 70% of the IBH-affected horses. Combination of these top seven r-allergens could diagnose > 90% of IBH-affected horses with a specificity of > 95%. Correlation between differently expressed r-allergens was usually high (mean = 0.69, range: 0.28-0.91). Conclusion: This microarray will be a powerful tool for the development of component-resolved, patient-tailored AIT for IBH and could be useful for the study of allergy to biting midges in humans and other species.

    Polymer types ingested by northern fulmars (Fulmarus glacialis) and southern hemisphere relatives
    Kühn, Susanne ; Oyen, Albert van; Bravo Rebolledo, Elisa L. ; Ask, Amalie V. ; Franeker, Jan Andries van - \ 2020
    Environmental Science and Pollution Research (2020). - ISSN 0944-1344
    Fourier transform infrared spectroscopy (FTIR) - Ingestion - Marine plastic debris - Near infrared spectroscopy (NIR) - Northern fulmar (Fulmarus glacialis) - Procellariiformes

    Although ingestion of plastic by tubenosed seabirds has been documented regularly, identification of the polymer composition of these plastics has rarely been described. Polymer assessment may assist in identifying sources and may indicate risks from additives occurring in specific types of polymers. Using known test materials, two identification methods Fourier transform infrared spectroscopy and near infrared spectroscopy (FTIR and NIR) were compared. Although both methods were found to be similarly suitable for identification of plastic polymers, a significant difference was observed in identification of natural materials. FTIR frequently misclassified natural materials as being a synthetic polymer. Within our results, an 80% match score threshold functioned best to distinguish between natural items and synthetics. Using NIR, the historical variability of plastics ingested by northern fulmars (Fulmarus glacialis) from the Dutch sector of the North Sea was analysed for three time periods since the 1980s. For the more recent decade, variability between fulmars from different regions in the northeast Atlantic was investigated. Regional variation was further explored by analysing plastics obtained from the stomachs of southern hemisphere relatives of the fulmar (southern fulmar, cape petrel, snow petrel) and Wilson’s storm petrel. Results show that proportional abundance of polymer types in these seabirds is closely related to the plastic categories that they ingest (e.g. pellets, foam, fragments). The uptake of different plastic categories and related polymer types most likely reflects spatial and temporal variations in availability rather than ingestion preferences of the birds.

    Plants as Alternative Hosts for Human and Animal Pathogens – Second Edition
    Schikora, Adam ; Jackson, Robert Wilson ; Overbeek, Leo Van; Holden, Nicola - \ 2020
    Frontiers in Microbiology 11 (2020). - ISSN 1664-302X
    crop plants - E. coil - fresh produce - human pathogens on plants - Salmonella
    Synthesis and characterization of a supported Pd complex on carbon nanofibers for the selective decarbonylation of stearic acid to 1-heptadecene : The importance of subnanometric Pd dispersion
    Ochoa, Elba ; Henao, Wilson ; Fuertes, Sara ; Torres, Daniel ; Haasterecht, Tomas Van; Scott, Elinor ; Bitter, Harry ; Suelves, Isabel ; Pinilla, Jose Luis - \ 2020
    Catalysis Science & Technology 10 (2020)9. - ISSN 2044-4753 - p. 2970 - 2985.

    Production of linear α-olefins from renewable sources is gaining increasing attention because it allows the transition from the current petrochemical synthesis route to a more sustainable scenario. In this work, we describe the synthesis and characterization of an innovative catalyst based on a di-μ-chloro-bis[palladium(ii) anthranilate] complex highly dispersed by incipient wetness impregnation over acyl chlorinated carbon nanofibers. The subnanometric dispersion of the metal complex allowed higher catalytic efficiency for the selective decarbonylation of stearic acid to 1-heptadecene as compared to the reference homogenous catalyst. The best catalytic performance (90 mol% selectivity, 71 mol% conversion, and TON = 484) was achieved under mild reaction conditions (atmospheric pressure, 140 °C) with a Pd loading in solution of 0.14 mol%. The post-mortem catalyst characterization and the recyclability tests evidenced the high stability of the catalyst. The highly dispersed catalyst developed in this work provides new opportunities in the rational design of more efficient catalytic systems for the sustainable transformation of fatty acids.

    Migrancy and the differentiated agrarian landscapes : Land use, farming and the reproduction of the homestead in the Eastern Cape
    Hebinck, P.G.M. - \ 2020
    In: Migrant Labour after Apartheid / Bank, Leslie J., Posel, Dorrit, Wilson, Francis, HSRC Press - ISBN 9780796925794 - p. 240 - 260.
    An empirical evaluation of camera trap study design : How many, how long and when?
    Kays, Roland ; Arbogast, Brian S. ; Baker-Whatton, Megan ; Beirne, Chris ; Boone, Hailey M. ; Bowler, Mark ; Burneo, Santiago F. ; Cove, Michael V. ; Ding, Ping ; Espinosa, Santiago ; Gonçalves, André Luis Sousa ; Hansen, Christopher P. ; Jansen, Patrick A. ; Kolowski, Joseph M. ; Knowles, Travis W. ; Lima, Marcela Guimarães Moreira ; Millspaugh, Joshua ; McShea, William J. ; Pacifici, Krishna ; Parsons, Arielle W. ; Pease, Brent S. ; Rovero, Francesco ; Santos, Fernanda ; Schuttler, Stephanie G. ; Sheil, Douglas ; Si, Xingfeng ; Snider, Matt ; Spironello, Wilson R. - \ 2020
    Methods in Ecology and Evolution 11 (2020)6. - ISSN 2041-210X - p. 700 - 713.
    camera traps - community ecology - detectability - mammals - relative abundance - species richness - study design - wildlife surveys

    Camera traps deployed in grids or stratified random designs are a well-established survey tool for wildlife but there has been little evaluation of study design parameters. We used an empirical subsampling approach involving 2,225 camera deployments run at 41 study areas around the world to evaluate three aspects of camera trap study design (number of sites, duration and season of sampling) and their influence on the estimation of three ecological metrics (species richness, occupancy and detection rate) for mammals. We found that 25–35 camera sites were needed for precise estimates of species richness, depending on scale of the study. The precision of species-level estimates of occupancy (ψ) was highly sensitive to occupancy level, with <20 camera sites needed for precise estimates of common (ψ > 0.75) species, but more than 150 camera sites likely needed for rare (ψ < 0.25) species. Species detection rates were more difficult to estimate precisely at the grid level due to spatial heterogeneity, presumably driven by unaccounted habitat variability factors within the study area. Running a camera at a site for 2 weeks was most efficient for detecting new species, but 3–4 weeks were needed for precise estimates of local detection rate, with no gains in precision observed after 1 month. Metrics for all mammal communities were sensitive to seasonality, with 37%–50% of the species at the sites we examined fluctuating significantly in their occupancy or detection rates over the year. This effect was more pronounced in temperate sites, where seasonally sensitive species varied in relative abundance by an average factor of 4–5, and some species were completely absent in one season due to hibernation or migration. We recommend the following guidelines to efficiently obtain precise estimates of species richness, occupancy and detection rates with camera trap arrays: run each camera for 3–5 weeks across 40–60 sites per array. We recommend comparisons of detection rates be model based and include local covariates to help account for small-scale variation. Furthermore, comparisons across study areas or times must account for seasonality, which could have strong impacts on mammal communities in both tropical and temperate sites.

    Distinct Biogeographic Phenomena Require a Specific Terminology: A Reply to Wilson and Sagoff
    Essl, Franz ; Dullinger, Stefan ; Genovesi, Piero ; Hulme, Philip E. ; Jeschke, Jonathan M. ; Katsanevakis, Stelios ; Kühn, Ingolf ; Lenzner, Bernd ; Pauchard, Aníbal ; Pyšek, Petr ; Rabitsch, Wolfgang ; Richardson, David M. ; Seebens, Hanno ; Kleunen, Mark Van; Putten, Wim H. van der; Vilà, Montserrat ; Bacher, Sven - \ 2020
    Bioscience 70 (2020)2. - ISSN 0006-3568 - p. 111 - 114.
    On the scaling of activity in tropical forest mammals
    Cid, Bruno ; Carbone, Chris ; Fernandez, Fernando A.S. ; Jansen, Patrick A. ; Rowcliffe, J.M. ; O'Brien, Timothy ; Akampurira, Emmanuel ; Bitariho, Robert ; Espinosa, Santiago ; Gajapersad, Krishna ; Santos, Thiago M.R. ; Gonçalves, André L.S. ; Kinnaird, Margaret F. ; Lima, Marcela G.M. ; Martin, Emanuel ; Mugerwa, Badru ; Rovero, Francesco ; Salvador, Julia ; Santos, Fernanda ; Spironello, Wilson R. ; Wijntuin, Soraya ; Oliveira-Santos, Luiz Gustavo R. - \ 2020
    Oikos 129 (2020)5. - ISSN 0030-1299 - p. 668 - 676.
    activity behavior - body mass - camera traps - diet - energy budget - predation risk

    Activity range – the amount of time spent active per day – is a fundamental aspect contributing to the optimization process by which animals achieve energetic balance. Based on their size and the nature of their diet, theoretical expectations are that larger carnivores need more time active to fulfil their energetic needs than do smaller ones and also more time active than similar-sized non-carnivores. Despite the relationship between daily activity, individual range and energy acquisition, large-scale relationships between activity range and body mass among wild mammals have never been properly addressed. This study aimed to understand the scaling of activity range with body mass, while controlling for phylogeny and diet. We built simple empirical predictions for the scaling of activity range with body mass for mammals of different trophic guilds and used a phylogenetically controlled mixed model to test these predictions using activity records of 249 mammal populations (128 species) in 19 tropical forests (in 15 countries) obtained using camera traps. Our scaling model predicted a steeper scaling of activity range in carnivores (0.21) with higher levels of activity (higher intercept), and near-zero scaling in herbivores (0.04). Empirical data showed that activity ranges scaled positively with body mass for carnivores (0.061), which also had higher intercept value, but not for herbivores, omnivores and insectivores, in general, corresponding with the predictions. Despite the many factors that shape animal activity at local scales, we found a general pattern showing that large carnivores need more time active in a day to meet their energetic demands.

    The importance of vector control for the control and elimination of vector-borne diseases
    Wilson, Anne L. ; Courtenay, Orin ; Kelly-Hope, Louise A. ; Scott, Thomas W. ; Takken, Willem ; Torr, Steve J. ; Lindsay, Steve W. - \ 2020
    PLoS Neglected Tropical Diseases 14 (2020)1. - ISSN 1935-2727 - p. e0007831 - e0007831.

    Vector-borne diseases (VBDs) such as malaria, dengue, and leishmaniasis exert a huge burden of morbidity and mortality worldwide, particularly affecting the poorest of the poor. The principal method by which these diseases are controlled is through vector control, which has a long and distinguished history. Vector control, to a greater extent than drugs or vaccines, has been responsible for shrinking the map of many VBDs. Here, we describe the history of vector control programmes worldwide from the late 1800s to date. Pre 1940, vector control relied on a thorough understanding of vector ecology and epidemiology, and implementation of environmental management tailored to the ecology and behaviour of local vector species. This complex understanding was replaced by a simplified dependency on a handful of insecticide-based tools, particularly for malaria control, without an adequate understanding of entomology and epidemiology and without proper monitoring and evaluation. With the rising threat from insecticide-resistant vectors, global environmental change, and the need to incorporate more vector control interventions to eliminate these diseases, we advocate for continued investment in evidence-based vector control. There is a need to return to vector control approaches based on a thorough knowledge of the determinants of pathogen transmission, which utilise a range of insecticide and non-insecticide-based approaches in a locally tailored manner for more effective and sustainable vector control.

    Integrating geochronologic and instrumental approaches across the Bengal Basin
    Chamberlain, Elizabeth L. ; Goodbred, Steven L. ; Hale, Richard ; Steckler, Michael S. ; Wallinga, Jakob ; Wilson, Carol - \ 2020
    Earth Surface Processes and Landforms 45 (2020)1. - ISSN 0197-9337 - p. 56 - 74.
    Ganges–Brahmaputra Delta - geochronology - relative sea-level rise and subsidence - river channel avulsion - sedimentary basin evolution

    Constraining time is of critical importance to evaluating the rates and relative contributions of processes driving landscape change in sedimentary basins. The geomorphic character of the field setting guides the application of geochronologic or instrumental tools to this problem, because the viability of methods can be highly influenced by geomorphic attributes. For example, sediment yield and the linked potential for organic preservation may govern the usefulness of radiocarbon dating. Similarly, the rate of sediment transport from source to sink may determine the maturity and/or light exposure of mineral grains arriving in the delta and thus the feasibility of luminescence dating. Here, we explore the viability and quirks of dating and instrumental methods that have been applied in the Bengal Basin, and review the records that they have yielded. This immense, dynamic, and spatially variable system hosts the world's most inhabited delta. Outlining a framework for successful chronologic applications is thus of value to managing water and sediment resources for humans, here and in other populated deltas worldwide. Our review covers radiocarbon dating, luminescence dating, archaeological records and historical maps, short-lived radioisotopes, horizon markers and rod surface elevation tables, geodetic observations, and surface instrumentation. Combined, these tools can be used to reconstruct the history of the Bengal Basin from Late Pleistocene to present day. The growing variety and scope of Bengal Basin geochronology and instrumentation opens doors for research integrating basin processes across spatial and temporal scales.

    Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages
    Gauglitz, Julia M. ; Aceves, Christine M. ; Aksenov, Alexander A. ; Aleti, Gajender ; Almaliti, J. ; Bouslimani, A. ; Brown, Elizabeth A. ; Campeau, Anaamika ; Caraballo-Rodríguez, Andrés Mauricio ; Chaar, Rama ; Silva, Ricardo R. da; Demko, Alyssa M. ; Ottavio, Francesca Di; Elijah, Emmanuel ; Ernst, Madeleine ; Ferguson, L.P. ; Holmes, Xavier ; Jarmusch, Alan K. ; Jiang, Lingjing ; Kang, Kyo Bin ; Koester, I. ; Kwan, B. ; Li, Jie ; Li, Yueying ; Melnik, Alexey V. ; Molina-Santiago, Carlos ; Ni, B. ; Oom, Aaron L. ; Panitchpakdi, Morgan W. ; Petras, Daniel ; Quinn, Robert ; Sikora, Nicole ; Spengler, Katharina ; Teke, B. ; Tripathi, Anupriya ; Ul-Hasan, S. ; Hooft, Justin J.J. van der; Vargas, Fernando ; Vrbanac, Alison ; Vu, Anthony Q. ; Wang, Steven C. ; Weldon, K. ; Wilson, K. ; Wozniak, Jacob M. ; Yoon, Michael ; Bandeira, Nuno ; Dorrestein, Pieter C. - \ 2020
    Food Chemistry 302 (2020). - ISSN 0308-8146
    Fermentation - Food - LC-MS/MS - Metabolomics - Molecular networking - Tea - Untargeted mass spectrometry - Yogurt

    In our daily lives, we consume foods that have been transported, stored, prepared, cooked, or otherwise processed by ourselves or others. Food storage and preparation have drastic effects on the chemical composition of foods. Untargeted mass spectrometry analysis of food samples has the potential to increase our chemical understanding of these processes by detecting a broad spectrum of chemicals. We performed a time-based analysis of the chemical changes in foods during common preparations, such as fermentation, brewing, and ripening, using untargeted mass spectrometry and molecular networking. The data analysis workflow presented implements an approach to study changes in food chemistry that can reveal global alterations in chemical profiles, identify changes in abundance, as well as identify specific chemicals and their transformation products. The data generated in this study are publicly available, enabling the replication and re-analysis of these data in isolation, and serve as a baseline dataset for future investigations.

    Evaluating the SandFlow, an acoustic sediment transport sensor
    Rezaei, Mahrooz ; Goossens, Dirk ; Riksen, Michel J.P.M. - \ 2020
    Aeolian Research 42 (2020). - ISSN 1875-9637
    Acoustic sensor - Sand transport - SandFlow - Wind

    The SandFlow is an acoustic device for detecting and measuring aeolian sand transport. It is based on the FlowCapt sensor, an instrument developed to measure aeolian snow transport. This study investigates the performance of the SandFlow in relation to the Saltiphone and the Modified Wilson and Cooke sampler, two devices frequently used in aeolian sand transport. The performance of the SandFlow was tested during three wind erosion events on the Dutch barrier island Terschelling and also in laboratory tests. Results show that the SandFlow adequately registers the periods of aeolian sand transport provided sand transport is sufficiently intense. For low sand transport the SandFlow is less accurate, although the periods with sand transport may still be detected. The sand transport fluxes measured by the SandFlow were lower than those measured by the MWAC although they remained within the same order of magnitude. Laboratory measurements showed that the efficiency of the SandFlow to register sand transport is close to 100% for sand coarser than 300 µm. For finer sand, efficiency decreases rapidly although the instrument remains usable for particles coarser than 150 µm provided appropriate corrections for efficiency are made. This study shows that the SandFlow can be used for aeolian sand transport provided the erosion event is strong enough and the particles are not too fine.

    Distribution maps of cetacean and seabird populations in the North‐East Atlantic
    Waggitt, J.J. ; Evans, P.G.H. ; Andrade, J. ; Banks, A.N. ; Boisseau, O. ; Bolton, M. ; Bradbury, G. ; Brereton, T. ; Camphuysen, C.J. ; Durinck, J. ; Felce, T. ; Fijn, R.C. ; Garcia‐Baron, I. ; Garthe, S. ; Geelhoed, S.C.V. ; Gilles, A. ; Goodall, M. ; Haelters, J. ; Hamilton, S. ; Hartny‐Mills, L. ; Hodgins, N. ; James, K. ; Jessopp, M. ; Kavanagh, A.S. ; Leopold, M. ; Lohrengel, K. ; Louzao, M. ; Markones, N. ; Martinez‐Cediera, J. ; O’Cadhla, O. ; Perry, S.I. ; Pierce, G.J. ; Ridoux, V. ; Robinson, K.P. ; Santos, M.B. ; Saavedra, C. ; Skov, H. ; Stienen, E.W.M. ; Sveegaard, S. ; Thompson, P. ; Vanermen, N. ; Wall, D. ; Webb, A. ; Wilson, J. ; Wanless, S. ; Hiddink, J.G. - \ 2020
    Journal of Applied Ecology 57 (2020)2. - ISSN 0021-8901 - p. 253 - 269.
    Distribution maps of cetaceans and seabirds at basin and monthly scales are needed for conservation and marine management. These are usually created from standardised and systematic aerial and vessel surveys, with recorded animal densities interpolated across study areas. However, distribution maps at basin and monthly scales have previously not been possible because individual surveys have restricted spatial and temporal coverage. This study develops an alternative approach consisting of: (1) collating diverse survey data to maximise spatial and temporal coverage, (2) using detection functions to estimate variation in the surface area covered (km2) among these surveys, standardising measurements of effort and animal densities, and (3) developing species distribution models (SDM) that overcome issues with heterogeneous and uneven coverage. 2.68 million km of survey data in the North‐East Atlantic between 1980 and 2018 were collated and standardised. SDM using Generalized Linear Models and General Estimating Equations in a hurdle approach were developed. Distribution maps were then created for 12 cetacean and 12 seabird species at 10 km and monthly resolution. Qualitative and quantitative assessment indicated good model performance. Synthesis and applications. This study provides the largest ever collation and standardisation of diverse survey data for cetaceans and seabirds, and the most comprehensive distribution maps of these taxa in the North‐East Atlantic. These distribution maps have numerous applications including the identification of important areas needing protection, and the quantification of overlap between vulnerable species and anthropogenic activities. This study demonstrates how the analysis of existing and diverse survey data can meet conservation and marine management needs.
    NEOTROPICAL XENARTHRANS: a data set of occurrence of xenarthran species in the Neotropics
    Santos, Paloma Marques ; Bocchiglieri, Adriana ; Chiarello, Adriano Garcia ; Paglia, Adriano Pereira ; Moreira, Adryelle ; Souza, Agnis Cristiane de; Abba, Agustin Manuel ; Paviolo, Agustin ; Gatica, Ailin ; Medeiro, Akyllan Zoppi ; Costa, Alan Nilo ; Gallina, Alberto Gonzalez ; Yanosky, Alberto A. ; Jesus, Alejandro ; Bertassoni, Alessandra ; Rocha, Alessandro ; Bovo, Alex Augusto Abreu ; Bager, Alex ; Mol, Alexandra Cravino ; Martensen, Alexandre Camargo ; Faustino, Alexandre Casagrande ; Lopes, Alexandre Martins Costa ; Percequillo, Alexandre Reis ; Vogliotti, Alexandre ; Keuroghlian, Alexine ; Colina, María Alicia de la; Devlin, Allison L. ; García-Olaechea, Alvaro ; Sánchez, Amadeo ; Srbek-Araujo, Ana Carolina ; Ochoa, Ana Cecilia ; Oliveira, Ana Cristina Mendes ; Lacerda, Ana Cristyna Reis ; Campelo, Ana Kellen Nogueira ; Oliveira Paschoal, Ana Maria de; Costa, Ana Raíssa Cunha ; Meiga, Ana Yoko Ykeuti ; Jesus, Anamélia Souza ; Feijó, Anderson ; Hirsch, André ; Silva, André Luiz Ferreira da; Botelho, André Luis Moura ; Regolin, André Luis ; Lanna, André Monnerat ; Nunes, André Valle ; Kindel, Andreas ; Moraes, Andreia Magro ; Gatti, Andressa ; Noss, Andrew J. ; Nobre, Andrezza Bellotto ; Montanarin, Anelise ; Deffaci, Ângela Camila ; Albuquerque, Anna Carolina Figueiredo de; Oliveira, Anne Karoline de; Mangione, Antonio Marcelo ; Pontes, Antonio Rossano Mendes ; Bertoldi, Ariane Teixeira ; Calouro, Armando Muniz ; Desbiez, Arnaud L.J. ; Fernandes, Arthur ; Ferreguetti, Atilla Colombo ; Silva, Maria Augusta Andrade da; Zimbres, Barbara ; Luciano, Beatriz Fernandes Lima ; Thoisy, Benoit de; Niebuhr, Bernardo Brandão S. ; Papi, Bernardo ; Gómez-Valencia, Bibiana ; Santos, Bráulio A. ; Lima, Breno Campelo ; Oliveira, Bruna Gomes ; Santos, Bruna Silva ; Campos, Bruno Augusto Torres Parahyba ; Leles, Bruno ; Albuquerque França, Bruno Rodrigo de; Lim, Burton ; Oliveira, Caetano Troncoso ; Cantagallo, Camila ; Lara, Camila Clozato ; Lima, Camila Silveira ; Gestich, Carla Cristina ; Melo-Soares, Carla Danielle de; Peres, Carlos A. ; Kasper, Carlos Benhur ; Candia-Gallardo, Carlos ; Angelo, Carlos De; Fragoso, Carlos Eduardo ; Freitas, Carlos Henrique de; Salvador, Carlos Henrique ; Brocardo, Carlos R. ; Melo, Carolina Depolito ; Leuchtenberger, Caroline ; Braga, Caryne ; Sánchez-Lalinde, Catalina ; Bueno, Cecília ; Luna, Cecília Licarião ; Rojano, Cesar ; Hurtado, Cindy Meliza ; Santos, Cinthya Chiva dos; Tellaeche, Cintia ; Rosa, Clarissa ; Campos, Claudia Bueno de; Silva, Cláudia Regina ; Kanda, Claudia Zukeran ; Jenkins, Clinton N. ; McDonough, Colleen ; Trinca, Cristiano Trapé ; Cunha, Cristina Jaques da; Widmer, Cynthia Elisa ; Santos, Cyntia ; Buscariol, Daiane ; Carreira, Daiane Cristina ; Carvalho, Danianderson Rodrigues ; Silva Ferraz, Daniel da; Casali, Daniel ; Thornton, Daniel ; Vasconcellos, Daniela Rodrigues ; Barcelos, Daniele ; Brown, Danielle ; Ramos, Daniella Leal ; Moreira, Danielle Oliveira ; Yogui, Débora Regina ; Faria, Deborah ; Sana, Denis Alessio ; Mattia, Denise Lidoro de; Henz, Denison José ; Friedeberg, Diana B. ; Carvalho, Diana Letícia Kruger Pacheco ; Astúa, Diego ; Queirolo, Diego ; Varela, Diego M. ; Eaton, Donald P. ; Dias, Douglas Matos ; Rivadeneira, Edgar Federico ; Rocha, Ednaldo Cândido ; Abreu-Júnior, Edson Fiedler de; Carrano, Eduardo ; Santos, Eduardo Marques ; Setz, Eleonore Zulnara Freire ; Carvalho, Elildo Alves Ribeiro ; Almeida Chiquito, Elisandra de; Matos Cardoso, Elizandra de; Mendonça, Eloisa Neves ; Bastiani, Elvira D'; Vieira, Emerson M. ; Ramalho, Emiliano Esterci ; Guijosa-Guadarrama, Emiliano ; González, Enrique ; Maggiorini, Erica Vanessa ; Fischer, Erich ; Aguiar, Erick Francisco ; Castro, Érika Paula ; Peña-Cuéllar, Erika de la; Viveiros de Castro, Ernesto B. ; Brítez, Evelyn Beatriz ; Vanderhoeven, Ezequiel Andres ; Pedó, Ezequiel ; Rocha, Fabiana Lopes ; Girardi, Fabiane ; Oliveira Roque, Fabio de; Mazim, Fábio Dias ; Barros, Fabio Monteiro de; Martello, Felipe ; Fantacini, Felipe Moreli ; Pedrosa, Felipe ; Peters, Felipe Bortolotto ; Abra, Fernanda Delborgo ; Azevedo, Fernanda Cavalcanti de; Silva Santos, Fernanda da; Silva, Fernanda Guedes da; Teixeira, Fernanda Zimmermann ; Perini, Fernando Araujo ; Passos, Fernando C. ; Carvalho, Fernando ; Azevedo, Fernando Cesar Cascelli de; Pinho, Fernando Ferreira de; Gonçalves, Fernando ; Lima, Fernando ; Contreras-Moreno, Fernando M. ; Pedroni, Fernando ; Tortato, Fernando Rodrigo ; Santos, Filipe Pereira Rego ; Caruso, Flavia ; Tirelli, Flávia Pereira ; Miranda, Flávia Regina ; Rodrigues, Flávio Henrique Guimarães ; Ubaid, Flávio Kulaif ; Palmeira, Francesca Belem Lopes ; Silva, Franciane Almeida da; Grotta-Neto, Francisco ; Souza, Franco Leandro de; Costa, Francys Emanuelle ; Pérez-Garduza, Freddy ; Delsuc, Frédéric ; Lemos, Frederico ; Pinto, Fredy Ramirez ; Boaglio, Gabriel Ivan ; Massocato, Gabriel Fávero ; Preuss, Gabriel ; Hofmann, Gabriel Selbach ; Aguiar, Gabriel Lima ; Oliveira, Gabriela Schuck ; Duarte, Gabriela Teixeira ; Beca, Gabrielle ; Giné, Gastón Andrés Fernandez ; Batista, Graziele Oliveira ; Gil, Guillermo Eduardo ; Gonsioroski, Gustavo ; Secco, Helio ; Medeiros, Hugo Reis ; Coelho, Igor Pfeifer ; Franceschi, Ingridi Camboim ; Bernardi, Itiberê ; Torre, Antonio de la; Zocche, Jairo José ; Seibert, Jardel Brandão ; Faria Falcão, Jéssica Caroline de; Dias, Jéssica Helena Mangueira ; Nodari, Joana Zorzal ; Oliveira, João Alves ; Giovanelli, João Gabriel Ribeiro ; Favoretti, João Paulo Pandini ; Polisar, John ; Sponchiado, Jonas ; Cherem, Jorge José ; Ramírez, José Fernando Moreira ; Toledo, José Julio de; Duarte, José Maurício Barbanti ; Matos, Jose Roberto de; Arrabal, Juan Pablo ; Faria Oshima, Júlia Emi de; Ribeiro, Juliana Fernandes ; Bogoni, Juliano André ; Pacheco, Julio Javier Chacón ; Schuchmann, Karl L. ; Ferraz, Katia M.P.M.B. ; Santos Everton, Laís dos; Bailey, Larissa L. ; Gonçalves, Larissa Oliveira ; Cullen, Laury ; Andrade, Layla Reis de; Trevelin, Leonardo Carreira ; Bonjorne, Lilian ; Almeida Rodrigues, Livia de; Leuzinger, Lucas ; Perillo, Lucas Neves ; Araújo, Luciana Souza ; Hufnagel, Ludmila ; Ribeiro, Ludmilla Oliveira ; Bernardo, Luis Renato Rezende ; Oliveira-Santos, Luiz Gustavo Rodrigues ; Varzinczak, Luiz Henrique ; Borges, Luiz Henrique Medeiros ; Guimarães, Luiza Neves ; Möcklinghoff, Lydia ; Oliveira, Marcela Alvares ; Magioli, Marcelo ; Assis Jardim, Márcia Maria de; Oliveira, Márcio Leite de; Tortato, Marcos Adriano ; Dums, Marcos ; Iezzi, Maria Eugenia ; Pereira, Maria João Ramos ; Jorge, Maria Luísa ; Castro Morini, Maria Santina de; Landis, Mariana Bueno ; Xavier, Mariana Sampaio ; Barros, Marília A.S. ; Silva, Marina Lima da; Rivero, Marina ; Zanin, Marina ; Marques, Marinêz Isaac ; Alves, Mario Henrique ; Bitetti, Mario S. Di; Alvarez, Martín R. ; Graipel, Maurício Eduardo ; Godoi, Mauricio Neves ; Benedetti, Maximiliano Augusto ; Beltrão, Mayara Guimarães ; Monteiro, Miguel Coutinho Moretta ; Paula, Milton José de; Perilli, Miriam Lucia Lages ; Silva, Murillo Prado da; Villar, Nacho ; Albuquerque, Natasha Moraes De; Canassa, Nathália F. ; Filho, Newton Mota ; Rosa Oliveira, Nicole da; Pasqualotto, Nielson ; Cáceres, Nilton Carlos ; Attias, Nina ; Favarini, Marina Ochoa ; Ribeiro, Otávio Santi ; Gonçalves, Pablo Rodrigues ; Rocha, Patrício Adriano da; Condé, Paula Alves ; Akkawi, Paula ; Cruz, Paula ; Lira, Paula Koeler ; Ferreira, Paula Modenesi ; Arroyo-Gerala, Paulina ; Hartmann, Paulo Afonso ; Tarso Zuquim Antas, Paulo de; Marinho, Paulo Henrique ; Faria Peres, Pedro Henrique de; Peña-Mondragón, Juan Luis ; Lombardi, Pryscilla Moura ; Souza Laurindo, Rafael de; Alves, Rafael Souza Cruz ; Grangeiro, Raissa Danielle Praxedes ; Silva, Ramon Lima ; Beltrão-Mendes, Raone ; Bonikowski, Renata Twardowsky Ramalho ; Reppucci, Juan ; Arrais, Ricardo Corassa ; Sampaio, Ricardo ; Sartorello, Ricardo ; Bovendorp, Ricardo Siqueira ; McNab, Roan ; Hack, Robson Odeli Espíndola ; Magalhães, Rodolfo Assis ; Araújo, Rodrigo Costa ; Almeida Nobre, Rodrigo de; Pérez, Rodrigo Raúl León ; Massara, Rodrigo Lima ; Paula, Rogério Cunha de; Anleu, Rony García ; Marques, Rosane Vieira ; Dornas, Rubem ; Rolim, Samir Gonçalves ; Cavalcanti, Sandra M.C. ; Lima, Saulo Ramos ; Ballari, Sebastián A. ; Santamaría, Silvia Benito ; Silva, Sofia Marques ; Age, Stefani Gabrieli ; Godim, Tayana ; Sobral-Souza, Thadeu ; Maccarini, Thiago Bernardes ; Rodrigues, Thiago Ferreira ; Piovezan, Ubiratan ; Cunha Tavares, Valéria da; Quiroga, Verónica Andrea ; Krepschi, Victor Gasperotto ; Filho, Vilmar Picinatto ; Galvão Bastazini, Vinícius Augusto ; Oliveira Gasparotto, Vinicius Peron de; Orsini, Vinicius Santana ; Guedes Layme, Viviane Maria ; Hannibal, Wellington ; Dáttilo, Wesley ; Carvalho, William Douglas de; Loughry, William James ; Blanco, Yamil Edgardo Di; Núñez-Regueiro, Mauricio M. ; Giubbina, Marina Furlan ; Passamani, Marcelo ; Alagão Querido, Luciano Carramaschi de; Costa Toledo, Gustavo Alvez da; Ribeiro, Igor Kintopp ; Quintilham, Lucas ; Bustos, Soledad de; Maza, Javier de la; Lima Neto, Jorge Ferreira ; Kossel de Andrade Silva, Katyucha Von; Sartorello, Leonardo ; Rampim, Lilian Elaine ; Marás, Gustavo A. ; Camino, Micaela ; Freitas-Junior, Mozart ; Perovic, Pablo Gaston ; Paolino, Roberta Montanheiro ; Ferreira, Scarlat Dalva ; Towns, Valeria ; Esperandio, Isadora Beraldi ; Aximoff, Izar ; Beduschi, Júlia ; Guenther, Mariana ; Cassia Bianchi, Rita de; Keuroghlian-Eaton, Sean ; Mendes, Sérgio Lucena ; Fatima Cunha, Lerrane de; Cirignoli, Sebastián ; Ciocheti, Giordano ; Prado, Helena Alves do; Fernandes-Ferreira, Hugo ; Mendes de Sena, Liana Mara ; Yamane, Marcelo Hideki ; Brennand, Pamella G.G. ; Silva, Rayana Diniz da; Escobar, Santiago ; Endo, Whaldener ; Hurtado, Rafael Reyna ; Gontijo, Nila Rássia Costa ; Marsh, Laura K. ; Severo, Magnus Machado ; Pardo, Julia Martinez ; Costa, Sebastián Andrés ; Melo, Geruza Leal ; Santana, Gindomar Gomes ; Miranda Mourão, Guilherme de; Gaspari, Gustavo Gabirele ; Duarte, Herbert ; Cabral, Hugo ; Silva, Leonardo Henrique da; Mendonça, Luana ; Barbosa, Lucas Lobo ; Santos, Manuela Vieira dos; Moraes, Marcela Figuerêdo Duarte ; Gordo, Marcelo ; Versiani, Natalia Fraguas ; Cantero, Nicolás ; Pays, Olivier ; Guedes, Patrícia Gonçalves ; Colas-Rosas, Paul François ; Ribeiro, Paulo ; Renaud, Pierre Cyril ; Hoogesteijn, Rafael Jan ; Ayala, Rodrigo ; Cunha, Rogério Grassetto Teixeira da; Schaub, Roxane ; Laurito, Sabrina ; Betkowski, Samuel Eurich ; Cortez, Sara ; Silva, Shirley Seixas Pereira ; Oliveira, Tadeu Gomes de; Spironello, Wilson Roberto ; Gengler, Nicholas ; Hidalgo, Mircea Mihart ; Juárez, Rugieri ; Iglesias, Jesús A. ; Anacleto, Teresa Cristina ; Souza Fialho, Marcos de; Cavicchioli, Guilherme ; Beccato, Maria Angélica Barbosa ; Silva, Marcelo da; Neto, Omar Correia ; Lopes, Karine Galisteo Diemer ; Godoy, Leandro Perez ; Luiz, Micheli Ribeiro ; Rojas Bonzi, Viviana B. ; Ferreira, Guilherme Braga ; Oliveira, Marcelo Juliano Rabelo ; Hinojosa, Javier ; Oliveira, Luiz Flamarion Barbosa de; Nagy-Reis, Mariana Baldy ; Ramirez, Sixto Fernández ; Concone, Henrique Villas Boas ; Mourthe, Italo ; Martínez-Lanfranco, Juan A. ; Zanoni, Juliani Bruna ; Moreira, Tainah Cruz ; Guarderas, Zoila Vega ; Bazilio, Sérgio ; Cervini, Marcelo ; Pinheiro, Marcell Soares ; Morato, Ronaldo Gonçalves ; Peroni, Nivaldo ; Trigo, Tatiane Campos ; Machado, Ricardo Bomfim ; Gaspari, Fernando ; Koenemann, Joceleia G. ; Rudolf, Juan Carlos ; Benchimol, Maíra ; Vieira, Marcus Vinícius ; Retta, Lucía Martínez ; Santiago, Pablo Gerardo Fernández ; Ciccia, Paula Gonzalez ; Estrela, Pedro Cordeiro ; Carvalho, Santiago ; Esbérard, Carlos Eduardo Lustosa ; Cruz, Yaribeth Bravata de la; Castro-Prieto, Jessica ; Braga, Ricardo Miranda ; Cartes, Jose Luis ; Andrade-Núñez, María José ; Denkiewicz, Natalia Mariana ; Falconi, Nereyda ; Pezzuti, Juarez Carlos Brito ; Castillo Cordero, Hugo Fernando del; Sousa, Luziene Conceição de; Gaspari Júnior, Roque Lázaro de; Santos-Filho, Manoel ; Almeida, Josué Santos ; Thompson, Jeffrey J. ; Santos, Juliana Silveira dos; Pereira-Ribeiro, Juliane ; Burs, Kathrin ; Silva, Kena Ferrari Moreira da; Velilla, Marianela ; Silva, Marina Xavier da; Sancha, Noé U. de la; Pinheiro, Paula Fabiana ; Castilho, Pedro Volkmer de; Bercê, William ; Assis, Julia Camara ; Tonetti, Vinicius Rodrigues ; Alves-Eigenheer, Milene ; Chinem, Simonne ; Honda, Laura K. ; Godoy Bergallo, Helena de; Alberici, Vinicius ; Wallace, Robert ; Campos Krauer, Juan Manuel ; Ribeiro, Milton Cezar ; Galetti, Mauro - \ 2019
    Ecology 100 (2019)7. - ISSN 0012-9658
    biodiversity hotspot - cingulata - forest fragmentation - habitat loss - neotropical mammals - neotropical region - pilosa - xenarthra

    Xenarthrans—anteaters, sloths, and armadillos—have essential functions for ecosystem maintenance, such as insect control and nutrient cycling, playing key roles as ecosystem engineers. Because of habitat loss and fragmentation, hunting pressure, and conflicts with domestic dogs, these species have been threatened locally, regionally, or even across their full distribution ranges. The Neotropics harbor 21 species of armadillos, 10 anteaters, and 6 sloths. Our data set includes the families Chlamyphoridae (13), Dasypodidae (7), Myrmecophagidae (3), Bradypodidae (4), and Megalonychidae (2). We have no occurrence data on Dasypus pilosus (Dasypodidae). Regarding Cyclopedidae, until recently, only one species was recognized, but new genetic studies have revealed that the group is represented by seven species. In this data paper, we compiled a total of 42,528 records of 31 species, represented by occurrence and quantitative data, totaling 24,847 unique georeferenced records. The geographic range is from the southern United States, Mexico, and Caribbean countries at the northern portion of the Neotropics, to the austral distribution in Argentina, Paraguay, Chile, and Uruguay. Regarding anteaters, Myrmecophaga tridactyla has the most records (n = 5,941), and Cyclopes sp. have the fewest (n = 240). The armadillo species with the most data is Dasypus novemcinctus (n = 11,588), and the fewest data are recorded for Calyptophractus retusus (n = 33). With regard to sloth species, Bradypus variegatus has the most records (n = 962), and Bradypus pygmaeus has the fewest (n = 12). Our main objective with Neotropical Xenarthrans is to make occurrence and quantitative data available to facilitate more ecological research, particularly if we integrate the xenarthran data with other data sets of Neotropical Series that will become available very soon (i.e., Neotropical Carnivores, Neotropical Invasive Mammals, and Neotropical Hunters and Dogs). Therefore, studies on trophic cascades, hunting pressure, habitat loss, fragmentation effects, species invasion, and climate change effects will be possible with the Neotropical Xenarthrans data set. Please cite this data paper when using its data in publications. We also request that researchers and teachers inform us of how they are using these data

    Global patterns and drivers of ecosystem functioning in rivers and riparian zones
    Tiegs, Scott D. ; Costello, David M. ; Isken, Mark W. ; Woodward, Guy ; McIntyre, Peter B. ; Gessner, Mark O. ; Chauvet, Eric ; Griffiths, Natalie A. ; Flecker, Alex S. ; Acuña, Vicenç ; Albariño, Ricardo ; Allen, Daniel C. ; Alonso, Cecilia ; Andino, Patricio ; Arango, Clay ; Aroviita, Jukka ; Barbosa, Marcus V.M. ; Barmuta, Leon A. ; Baxter, Colden V. ; Bell, Thomas D.C. ; Bellinger, Brent ; Boyero, Luz ; Brown, Lee E. ; Bruder, Andreas ; Bruesewitz, Denise A. ; Burdon, Francis J. ; Callisto, Marcos ; Canhoto, Cristina ; Capps, Krista A. ; Castillo, María M. ; Clapcott, Joanne ; Colas, Fanny ; Colón-Gaud, Checo ; Cornut, Julien ; Crespo-Pérez, Verónica ; Cross, Wyatt F. ; Culp, Joseph M. ; Danger, Michael ; Dangles, Olivier ; Eyto, Elvira De; Derry, Alison M. ; Villanueva, Veronica Díaz ; Douglas, Michael M. ; Elosegi, Arturo ; Encalada, Andrea C. ; Entrekin, Sally ; Espinosa, Rodrigo ; Ethaiya, Diana ; Ferreira, Verónica ; Ferriol, Carmen ; Flanagan, Kyla M. ; Fleituch, Tadeusz ; Follstad Shah, Jennifer J. ; Barbosa, André Frainer ; Friberg, Nikolai ; Frost, Paul C. ; Garcia, Erica A. ; Lago, Liliana García ; Soto, Pavel Ernesto García ; Ghate, Sudeep ; Giling, Darren P. ; Gilmer, Alan ; Gonçalves, José Francisco ; Gonzales, Rosario Karina ; Graça, Manuel A.S. ; Grace, Mike ; Grossart, Hans Peter ; Guérold, François ; Gulis, Vlad ; Hepp, Luiz U. ; Higgins, Scott ; Hishi, Takuo ; Huddart, Joseph ; Hudson, John ; Imberger, Samantha ; Iñiguez-Armijos, Carlos ; Iwata, Tomoya ; Janetski, David J. ; Jennings, Eleanor ; Kirkwood, Andrea E. ; Koning, Aaron A. ; Kosten, Sarian ; Kuehn, Kevin A. ; Laudon, Hjalmar ; Leavitt, Peter R. ; Lemes Da Silva, Aurea L. ; Leroux, Shawn J. ; LeRoy, Carri J. ; Lisi, Peter J. ; MacKenzie, Richard ; Marcarelli, Amy M. ; Masese, Frank O. ; McKie, Brendan G. ; Medeiros, Adriana Oliveira ; Meissner, Kristian ; Miliša, Marko ; Mishra, Shailendra ; Miyake, Yo ; Moerke, Ashley ; Mombrikotb, Shorok ; Mooney, Rob ; Moulton, Tim ; Muotka, Timo ; Negishi, Junjiro N. ; Neres-Lima, Vinicius ; Nieminen, Mika L. ; Nimptsch, Jorge ; Ondruch, Jakub ; Paavola, Riku ; Pardo, Isabel ; Patrick, Christopher J. ; Peeters, Edwin T.H.M. ; Pozo, Jesus ; Pringle, Catherine ; Prussian, Aaron ; Quenta, Estefania ; Quesada, Antonio ; Reid, Brian ; Richardson, John S. ; Rigosi, Anna ; Rincón, José ; Rîşnoveanu, Geta ; Robinson, Christopher T. ; Rodríguez-Gallego, Lorena ; Royer, Todd V. ; Rusak, James A. ; Santamans, Anna C. ; Selmeczy, Géza B. ; Simiyu, Gelas ; Skuja, Agnija ; Smykla, Jerzy ; Sridhar, Kandikere R. ; Sponseller, Ryan ; Stoler, Aaron ; Swan, Christopher M. ; Szlag, David ; Teixeira-De Mello, Franco ; Tonkin, Jonathan D. ; Uusheimo, Sari ; Veach, Allison M. ; Vilbaste, Sirje ; Vought, Lena B.M. ; Wang, Chiao Ping ; Webster, Jackson R. ; Wilson, Paul B. ; Woelfl, Stefan ; Xenopoulos, Marguerite A. ; Yates, Adam G. ; Yoshimura, Chihiro ; Yule, Catherine M. ; Zhang, Yixin X. ; Zwart, Jacob A. - \ 2019
    Science Advances 5 (2019)1. - ISSN 2375-2548 - p. 14966 - 14973.

    River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing assay to conduct a global-scale field experiment in greater than 1000 river and riparian sites. We found that Earth's biomes have distinct carbon processing signatures. Slow processing is evident across latitudes, whereas rapid rates are restricted to lower latitudes. Both the mean rate and variability decline with latitude, suggesting temperature constraints toward the poles and greater roles for other environmental drivers (e.g., nutrient loading) toward the equator. These results and data set the stage for unprecedented "next-generation biomonitoring" by establishing baselines to help quantify environmental impacts to the functioning of ecosystems at a global scale.

    Gap analysis for decision support tools, models and libraries : REFRESH D2.6
    Wigham, M.L.I. ; Tromp, S.O. ; Wilson, J. ; Bygrave, Kate - \ 2019
    REFRESH - 43 p.
    The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery
    Santen, Jeffrey A. Van; Jacob, Grégoire ; Singh, Amrit Leen ; Aniebok, Victor ; Balunas, Marcy J. ; Bunsko, Derek ; Neto, Fausto Carnevale ; Castaño-Espriu, Laia ; Chang, Chen ; Clark, Trevor N. ; Cleary Little, Jessica L. ; Delgadillo, David A. ; Dorrestein, Pieter C. ; Duncan, Katherine R. ; Egan, Joseph M. ; Galey, Melissa M. ; Haeckl, Jake ; Hua, Alex ; Hughes, Alison H. ; Iskakova, Dasha ; Khadilkar, Aswad ; Lee, Jung Ho ; Lee, Sanghoon ; Legrow, Nicole ; Liu, Dennis Y. ; Macho, Jocelyn M. ; McCaughey, Catherine S. ; Medema, Marnix H. ; Neupane, Ram P. ; O'Donnell, Timothy J. ; Paula, Jasmine S. ; Sanchez, Laura M. ; Shaikh, Anam F. ; Soldatou, Sylvia ; Terlouw, Barbara R. ; Tran, Tuan Anh ; Valentine, Mercia ; Hooft, Justin J.J. Van Der; Vo, Duy A. ; Wang, Mingxun ; Wilson, Darryl ; Zink, Katherine E. ; Linington, Roger G. - \ 2019
    ACS Central Science 5 (2019)11. - ISSN 2374-7943 - p. 1824 - 1833.

    Despite rapid evolution in the area of microbial natural products chemistry, there is currently no open access database containing all microbially produced natural product structures. Lack of availability of these data is preventing the implementation of new technologies in natural products science. Specifically, development of new computational strategies for compound characterization and identification are being hampered by the lack of a comprehensive database of known compounds against which to compare experimental data. The creation of an open access, community-maintained database of microbial natural product structures would enable the development of new technologies in natural products discovery and improve the interoperability of existing natural products data resources. However, these data are spread unevenly throughout the historical scientific literature, including both journal articles and international patents. These documents have no standard format, are often not digitized as machine readable text, and are not publicly available. Further, none of these documents have associated structure files (e.g., MOL, InChI, or SMILES), instead containing images of structures. This makes extraction and formatting of relevant natural products data a formidable challenge. Using a combination of manual curation and automated data mining approaches we have created a database of microbial natural products (The Natural Products Atlas, that includes 24 594 compounds and contains referenced data for structure, compound names, source organisms, isolation references, total syntheses, and instances of structural reassignment. This database is accompanied by an interactive web portal that permits searching by structure, substructure, and physical properties. The Web site also provides mechanisms for visualizing natural products chemical space and dashboards for displaying author and discovery timeline data. These interactive tools offer a powerful knowledge base for natural products discovery with a central interface for structure and property-based searching and presents new viewpoints on structural diversity in natural products. The Natural Products Atlas has been developed under FAIR principles (Findable, Accessible, Interoperable, and Reusable) and is integrated with other emerging natural product databases, including the Minimum Information About a Biosynthetic Gene Cluster (MIBiG) repository, and the Global Natural Products Social Molecular Networking (GNPS) platform. It is designed as a community-supported resource to provide a central repository for known natural product structures from microorganisms and is the first comprehensive, open access resource of this type. It is expected that the Natural Products Atlas will enable the development of new natural products discovery modalities and accelerate the process of structural characterization for complex natural products libraries.

    Research agenda for preventing mosquito-transmitted diseases through improving the built environment in sub-Saharan Africa
    Shenton, Fiona C. ; Addissie, Adamu ; Alabaster, Graham ; Baziwe, Dorothy ; Carrasco Tenezaca, Maria ; Chinula, Dingani ; Jatta, Ebrima ; Jawara, Musa ; Jones, Robert ; Knudsen, Jakob ; Krystosik, Amy R. ; Mccann, Robert ; Murima, N. ; Mutuku, Francis ; Nguela, Rachel Laure ; Nieto Sanchez, Claudia ; Nix, Emily ; Okumu, Fredros ; Ruel-bergeron, Sarah ; Spitzen, Jeroen ; Tusting, Lucy S. ; Wilson, Anne L. ; Wood, Hannah ; Zahouli Bi Zahouli, Julien ; Davies, Michael ; Lindsay, Steve W. - \ 2019
    Cities & Health (2019). - ISSN 2374-8834 - 9 p.
    Mosquito-transmitted diseases are a major threat to health in sub-Saharan Africa, but could be reduced through modifications to the built environment. Here we report findings from a major workshop held to identify the research gaps in this area, namely: (1) evidence of the health benefits to changes to the built environment, (2) understanding how mosquitoes enter buildings, (3) novel methods for reducing mosquito-house entry, (4) sustainable approaches for reducing mosquito habitats, (5) case studies of micro-financing for healthy homes and (6) methods for increasing scale-up. Multidisciplinary research is essential to build out mosquito-transmitted diseases, and not build them in.

    The Role of the Integrated Maize-Soybean-Chicken Value Chains in Sustaining Diverse Diets in Tanzania
    Wilson, Wilson ; Slingerland, M.A. ; Zanten, H.H.E. van; Baijukya, Frederick ; Oosting, S.J. ; Giller, K.E. - \ 2019
    In: Book of abstracts Tropentag 2019: Tropentag 2019International Research on Food Security, NaturalResource Management and Rural Development. - Göttingen : Cuvillier Verlag - ISBN 9783736970830 - p. 459 - 459.
    N2Africa Podcaster no. 57 : Putting nitrogen fixation to work for smallholder farmers in Africa: July and August 2019
    Schilt-van Ettekoven, C. ; Giller, K.E. ; Thuijsman, E.C. ; Gunnabo, A.H. ; Abetu, Tamiru ; Akakpo, Daniel ; Kermah, M. ; Jager, I. de; Ojo, C.T. ; Leonardo, Wilson ; Ayesiga, C. - \ 2019
    Wageningen : N2Africa project (N2Africa Podcaster 57) - 14 p.
    PhD Student special
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